freesurfer

Messages by Date

2023/06/12 Re: [Freesurfer] Error in longitudinal process step 3 Huang, Yujing
2023/06/12 Re: [Freesurfer] Error in longitudinal process step 3 Huang, Yujing
2023/06/12 [Freesurfer] trac-all ERROR: Option syn/acomm.flt.prep.trk unknown Stylianos Charalampous
2023/06/09 Re: [Freesurfer] Huge difference between volumes for Freesurfer vs CAT12 Michael Mc Laughlin
2023/06/09 Re: [Freesurfer] Generate Stats File for fornix.mgz in T1 weighted MRI ? Ahsan Ali
2023/06/09 Re: [Freesurfer] different results for gtmpvc with different tracers Federica Di Antonio
2023/06/09 Re: [Freesurfer] Huge difference between volumes for Freesurfer vs CAT12 Glasser, Matt
2023/06/09 Re: [Freesurfer] Huge difference between volumes for Freesurfer vs CAT12 Michael Mc Laughlin
2023/06/09 Re: [Freesurfer] Huge difference between volumes for Freesurfer vs CAT12 Michael Mc Laughlin
2023/06/09 [Freesurfer] Huge difference between volumes for Freesurfer vs CAT12 Michael Mc Laughlin
2023/06/07 [Freesurfer] trac-all error aparc+aseg_mask.bbr not found Stylianos Charalampous
2023/06/07 [Freesurfer] Calculate cortical thickness of a volumetric ROI Carlos Alcocer
2023/06/06 [Freesurfer] Volume files for clinical pipeline KennethSPrice
2023/06/06 [Freesurfer] Password Freesurfer VirtualBox Image Michael
2023/06/05 [Freesurfer] Request for Password to unzip FS_7_2_0_Ubuntu_18_04_06.ova.7z Kazuki Sakakura
2023/06/05 Re: [Freesurfer] Error with running retinotopy glm Loïc Daumail
2023/06/05 Re: [Freesurfer] Troubleshooting "could not open file" errors in FS 5.3 Huang, Yujing
2023/06/04 Re: [Freesurfer] cannot find freesurfer folder fsbuild
2023/06/04 [Freesurfer] cannot find freesurfer folder Pedro henrique barradas
2023/06/04 [Freesurfer] Pass code for FS_7_2_0_ubuntu_18_04_06.ova.7z Pedro henrique barradas
2023/06/04 Re: [Freesurfer] Troubleshooting "could not open file" errors in FS 5.3 Annchen Knodt
2023/06/02 Re: [Freesurfer] Troubleshooting "could not open file" errors in FS 5.3 Huang, Yujing
2023/06/02 Re: [Freesurfer] Troubleshooting "could not open file" errors in FS 5.3 Huang, Yujing
2023/06/02 [Freesurfer] 7.4.0 Recon-all_Clinical - error in computing lh.BA_exvixo.annot NicolasNorton
2023/06/02 [Freesurfer] aggregating outputs Nikolaidou, Sofia
2023/06/02 [Freesurfer] Freesurfer installation Stefan Rampp
2023/06/01 Re: [Freesurfer] Sourcing freesurfer fsbuild
2023/06/01 [Freesurfer] [FreeSurfer] SyntSR for noise reduction and/or cross-scanner comparisons Linnman, Clas,Ph.D.
2023/06/01 Re: [Freesurfer] Troubleshooting "could not open file" errors in FS 5.3 Huang, Yujing
2023/06/01 [Freesurfer] Error with running retinotopy glm Loïc Daumail
2023/06/01 [Freesurfer] Sourcing freesurfer Pedro henrique barradas
2023/06/01 Re: [Freesurfer] Problem installing FreeSurfer Michelangelo Fabbrizzi
2023/06/01 [Freesurfer] pass code Agosti, Giulia
2023/05/31 Re: [Freesurfer] Problem installing FreeSurfer fsbuild
2023/05/31 [Freesurfer] Problem installing FreeSurfer Michelangelo Fabbrizzi
2023/05/31 Re: [Freesurfer] source freesurfer error Pedro henrique barradas
2023/05/30 [Freesurfer] Dimension mismatch MRIS PREPROC Akansha Mahesh Naraindas
2023/05/30 Re: [Freesurfer] Smoothing with surf2surf Akansha Mahesh Naraindas
2023/05/30 Re: [Freesurfer] Smoothing with surf2surf Huang, Yujing
2023/05/30 Re: [Freesurfer] Smoothing with surf2surf Akansha Mahesh Naraindas
2023/05/30 Re: [Freesurfer] Smoothing with surf2surf Huang, Yujing
2023/05/30 [Freesurfer] Smoothing with surf2surf Akansha Mahesh Naraindas
2023/05/29 Re: [Freesurfer] source freesurfer error fsbuild
2023/05/29 [Freesurfer] source freesurfer error Pedro henrique barradas
2023/05/28 [Freesurfer] Use synthetic in recon-all pipeline Ruifeng Dong
2023/05/26 [Freesurfer] FS in a HPC cluster via module file: ERROR: Environment variable FREESURFER_HOME must be defined prior to sourcing Freesurfer Rob Kudyba
2023/05/26 [Freesurfer] Request for pass code Juri Kim
2023/05/26 [Freesurfer] recon-all-clinical Andrew Dedinas Geoly
2023/05/26 [Freesurfer] Fwd: The results of your email commands Rob Kudyba
2023/05/26 [Freesurfer] Tksurfer tmp.tcl Robert Terziev
2023/05/26 [Freesurfer] Generate Stats File for fornix.mgz in T1 weighted MRI ? Ahsan Ali
2023/05/25 [Freesurfer] Generate Stats File for fornix.mgz in T1 weighted MRI ? Ahsan Ali
2023/05/25 Re: [Freesurfer] Tracula dpath Missing Files Maffei, Chiara,PHD
2023/05/25 Re: [Freesurfer] change ants N4 bias field correction parameter in recon-all pipeline Keefe, Sarah
2023/05/25 [Freesurfer] Question about mri_convert --conform ruifeng14
2023/05/25 [Freesurfer] Asymmetry analysis Carlos Alcocer
2023/05/25 [Freesurfer] fsl fmri thresh_zstat1.nii file showing in fsaverage pial surface Gonzalo Rojas Costa
2023/05/25 Re: [Freesurfer] Cortical thickness of elephant brain Malav Shah
2023/05/25 Re: [Freesurfer] conjunction Douglas N. Greve
2023/05/25 Re: [Freesurfer] fsfast percent signal change Douglas N. Greve
2023/05/25 [Freesurfer] MICCAI Workshop on Machine Learning in Clinical NeuroImaging: Paper Submissions Vin
2023/05/24 [Freesurfer] conjunction Maria Czarnecka
2023/05/24 Re: [Freesurfer] Inquiry about mris_euler_number command Fischl, Bruce R.,PHD
2023/05/24 [Freesurfer] fsfast percent signal change Maria Czarnecka
2023/05/24 [Freesurfer] FW: Inquiry about mris_euler_number command Yun, Jenna
2023/05/24 Re: [Freesurfer] fMRIPrep: anatomical part Douglas N. Greve
2023/05/24 Re: [Freesurfer] Cortical thickness of elephant brain Douglas N. Greve
2023/05/24 [Freesurfer] fMRIPrep: anatomical part Michelle Diniz
2023/05/24 Re: [Freesurfer] Issue with running recon-all Fischl, Bruce R.,PHD
2023/05/24 Re: [Freesurfer] Issue with running recon-all hmarz...@student.ubc.ca
2023/05/23 Re: [Freesurfer] Issue with running recon-all Fischl, Bruce R.,PHD
2023/05/23 Re: [Freesurfer] Issue with running recon-all hmarz...@student.ubc.ca
2023/05/23 Re: [Freesurfer] Cortical thickness of elephant brain Malav Shah
2023/05/22 [Freesurfer] question about freeview in freesurfer 7.4.0 and qt tulu
2023/05/22 Re: [Freesurfer] Exporting an advanced segmentation mask for the ROI-based analyses Douglas N. Greve
2023/05/22 Re: [Freesurfer] Cortical thickness of elephant brain Douglas N. Greve
2023/05/22 Re: [Freesurfer] make brainstem surface file and make average brainstem surface Douglas N. Greve
2023/05/22 [Freesurfer] Exporting an advanced segmentation mask for the ROI-based analyses Yoo, Chi-Hyeon
2023/05/22 [Freesurfer] Cortical thickness of elephant brain Malav Shah
2023/05/21 [Freesurfer] make brainstem surface file and make average brainstem surface tulu
2023/05/20 Re: [Freesurfer] How can I increase radius of a binary disk? Andy Kim
2023/05/19 Re: [Freesurfer] Volume transformation issue Douglas N. Greve
2023/05/19 Re: [Freesurfer] How can I increase radius of a binary disk? Douglas N. Greve
2023/05/19 [Freesurfer] How can I increase radius of a binary disk? Andy Kim
2023/05/18 Re: [Freesurfer] FSL not installed in setup fsbuild
2023/05/18 [Freesurfer] Volume transformation issue Carlos Alcocer
2023/05/18 Re: [Freesurfer] Uncaught exceptions when processing some images with MiDeFace Bennet Fauber
2023/05/18 [Freesurfer] FSL not installed in setup Lauren Stephens
2023/05/18 Re: [Freesurfer] MiDeFace Hermann, Jacob
2023/05/18 Re: [Freesurfer] MiDeFace Douglas N. Greve
2023/05/18 Re: [Freesurfer] Help Needed with Thalamic NucleiDTI Module and Freeview Display Tregidgo, Henry
2023/05/18 [Freesurfer] MiDeFace Hermann, Jacob
2023/05/18 [Freesurfer] Help Needed with Thalamic NucleiDTI Module and Freeview Display 胡馨月
2023/05/18 [Freesurfer] Password to uncompress VM freesurfer Albert Juncà
2023/05/17 Re: [Freesurfer] Uncaught exceptions when processing some images with MiDeFace fsbuild
2023/05/17 Re: [Freesurfer] recon-all fsbuild
2023/05/17 Re: [Freesurfer] Uncaught exceptions when processing some images with MiDeFace Douglas N. Greve
2023/05/17 [Freesurfer] Uncaught exceptions when processing some images with MiDeFace Patrick Sadil
2023/05/16 [Freesurfer] Virtual Machine Passcode Mert T
2023/05/16 [Freesurfer] Imaging Neuroscience Thomas Yeo
2023/05/16 [Freesurfer] Password for ubuntu .7z file extraction Leonidas Georgiou
2023/05/15 Re: [Freesurfer] EasyReg Troubleshoot - Killed Nadia Kane
2023/05/15 Re: [Freesurfer] Cerebellum + Subcortical models extraction Douglas N. Greve
2023/05/15 Re: [Freesurfer] mri_synthmorph Douglas N. Greve
2023/05/15 Re: [Freesurfer] Approach for LR asymmetry analysis using ROIs? Douglas N. Greve
2023/05/15 Re: [Freesurfer] mri_robust_register for mouse brain? Douglas N. Greve
2023/05/15 Re: [Freesurfer] recon-all error: cannot find or read colortable_BARe: recon-all error: cannot find or read colortable_BA_thresh.txt_thresh.txt fsbuild
2023/05/15 [Freesurfer] Approach for LR asymmetry analysis using ROIs? Silberfeld, Andrew
2023/05/15 [Freesurfer] mri_synthmorph Nadia Kane
2023/05/15 Re: [Freesurfer] Cerebellum + Subcortical models extraction Nathan Santana Schunk
2023/05/15 [Freesurfer] Cerebellum + Subcortical models extraction Nathan Santana Schunk
2023/05/15 Re: [Freesurfer] Issue with running recon-all Fischl, Bruce R.,PHD
2023/05/15 [Freesurfer] Issue with running recon-all hmarz...@student.ubc.ca
2023/05/15 Re: [Freesurfer] mri_robust_register for mouse brain? Nadia Kane
2023/05/15 Re: [Freesurfer] mri_robust_register for mouse brain? Douglas N. Greve
2023/05/15 Re: [Freesurfer] [FreeSurfer] Process terminated when talairach was running Douglas N. Greve
2023/05/15 Re: [Freesurfer] Individualized subcortex atals generation with freesurfer derivatives Douglas N. Greve
2023/05/15 [Freesurfer] Individualized subcortex atals generation with freesurfer derivatives bong516612
2023/05/14 Re: [Freesurfer] [FreeSurfer] Process terminated when talairach was running Krystal Xiwing Yau
2023/05/14 [Freesurfer] mri_robust_register for mouse brain? Nadia Kane
2023/05/12 Re: [Freesurfer] EasyReg Troubleshoot - Killed Iglesias Gonzalez, Juan E.
2023/05/12 [Freesurfer] password m.77 ms77
2023/05/12 Re: [Freesurfer] recon-all for GM quantification Fischl, Bruce R.,PHD
2023/05/12 [Freesurfer] recon-all for GM quantification Nikolaidou, Sofia
2023/05/12 [Freesurfer] Password m.77 ms77
2023/05/12 Re: [Freesurfer] [FreeSurfer] Process terminated when talairach was running Douglas N. Greve
2023/05/12 Re: [Freesurfer] Cannot find subject for recon-all Huang, Yujing
2023/05/12 [Freesurfer] [FreeSurfer] Process terminated when talairach was running Krystal Xiwing Yau
2023/05/12 Re: [Freesurfer] Cannot find subject for recon-all Pedro henrique barradas
2023/05/11 [Freesurfer] Freesurfer 7.4.0 (May 2023) distribution now available fsbuild
2023/05/11 [Freesurfer] Registration, abstracts, & investigator-led abstracts open for INCF Neuroinformatics Assembly 2023! tibor.auer
2023/05/11 Re: [Freesurfer] Question on Freesurfer v.7.4.0 fsbuild
2023/05/11 [Freesurfer] Question on Freesurfer v.7.4.0 Codrin Mironiuc
2023/05/11 [Freesurfer] Question on needing forward field from registration from functional slabs to structural scans Codrin Mironiuc
2023/05/10 Re: [Freesurfer] EasyReg Troubleshoot - Killed Nadia Kane
2023/05/10 Re: [Freesurfer] Question about volumetric atlas ROIs overlap Douglas N. Greve
2023/05/10 Re: [Freesurfer] [FS-Fast error] SyntaxError Douglas N. Greve
2023/05/10 [Freesurfer] [FS-Fast error] SyntaxError 朱筱
2023/05/09 Re: [Freesurfer] Question about volumetric atlas ROIs overlap Nadvar, Negin
2023/05/09 [Freesurfer] EasyReg Troubleshoot - Killed Nadia Kane
2023/05/09 Re: [Freesurfer] FSGD 3-way interaction contrast Douglas N. Greve
2023/05/09 Re: [Freesurfer] change ants N4 bias field correction parameter in recon-all pipeline Douglas N. Greve
2023/05/09 Re: [Freesurfer] Intracranial Volume after Hypothalamus Segmentation Douglas N. Greve
2023/05/09 [Freesurfer] Intracranial Volume after Hypothalamus Segmentation Asmin Alam
2023/05/09 [Freesurfer] change ants N4 bias field correction parameter in recon-all pipeline 刘梦醒
2023/05/08 Re: [Freesurfer] register to mni space Woo-Suk Tae
2023/05/08 [Freesurfer] Request for password to unzip pre-installed VM freesurfer. Nathan Santana Schunk
2023/05/08 Re: [Freesurfer] mris_register options Douglas N. Greve
2023/05/08 Re: [Freesurfer] Hemisphere Volume Douglas N. Greve
2023/05/08 Re: [Freesurfer] PETsurfer: PVC without psf of the scanner Douglas N. Greve
2023/05/08 Re: [Freesurfer] Question about volumetric atlas ROIs overlap Douglas N. Greve
2023/05/08 Re: [Freesurfer] mris_register options Fischl, Bruce R.,PHD
2023/05/08 Re: [Freesurfer] error with mri_convert from nii made from TIFFs Huang, Yujing
2023/05/08 [Freesurfer] mris_register options Koten, Jan Willem (jan.ko...@uni-graz.at)
2023/05/08 [Freesurfer] Hemisphere Volume Necati Emre Şahin
2023/05/08 Re: [Freesurfer] PETsurfer: PVC without psf of the scanner Federica Di Antonio
2023/05/07 [Freesurfer] error with mri_convert from nii made from TIFFs Andrew M
2023/05/05 [Freesurfer] Question about volumetric atlas ROIs overlap Nadvar, Negin
2023/05/05 [Freesurfer] Coordinates of Tracula clusters Makenna B McGill
2023/05/05 Re: [Freesurfer] freeview surface edgecolor overlay Wang, Ruopeng
2023/05/05 [Freesurfer] control.dat not working Rosalia Dacosta Aguayo
2023/05/05 [Freesurfer] freeview surface edgecolor overlay Dr. Cornelius Kronlage
2023/05/04 Re: [Freesurfer] Why is this happening? Rosalia Dacosta Aguayo
2023/05/04 Re: [Freesurfer] Why is this happening? Rosalia Dacosta Aguayo
2023/05/04 Re: [Freesurfer] Why is this happening? Douglas N. Greve
2023/05/04 Re: [Freesurfer] mris_flatten .flat output in matlab Douglas N. Greve
2023/05/04 Re: [Freesurfer] apply an existing linear transform to a GRE phase map Douglas N. Greve
2023/05/04 Re: [Freesurfer] Is it possible to edit this kind of error with cp? Douglas N. Greve
2023/05/04 [Freesurfer] mris_flatten .flat output in matlab Manenti, Giorgio
2023/05/04 [Freesurfer] Virtualbox unzip password neda afzalian
2023/05/03 [Freesurfer] change ants N4 bias field correction parameter in recon-all pipeline 刘梦醒
2023/05/03 [Freesurfer] FSGD 3-way interaction contrast Fred d'Oleire Uquillas
2023/05/03 Re: [Freesurfer] apply an existing linear transform to a GRE phase map Wighton, Paul
2023/05/03 [Freesurfer] apply an existing linear transform to a GRE phase map Balentine, Daniel Grimm
2023/05/03 [Freesurfer] Request for Password for FS_7_2_0_Ubuntu_18_04_06.ova.7z Payam Jannatdoust
2023/05/02 Re: [Freesurfer] contrast-FSGD question Fred d'Oleire Uquillas
2023/05/02 [Freesurfer] FreeSurfer VM Password Tan Yee Fan
2023/05/02 Re: [Freesurfer] FreeSurfer VM Password Tan Yee Fan
2023/05/02 Re: [Freesurfer] dcmunpack behavior with scouts Huang, Yujing
2023/05/02 Re: [Freesurfer] dcmunpack behavior with scouts Proulx, Jean Sebastien
2023/05/02 Re: [Freesurfer] Error Sourcing Freesurfer Kumar, Avnish
2023/05/02 Re: [Freesurfer] SynthSeg terminates with 'std::bad_alloc' error when using --threads option (>1) Kumar, Avnish
2023/05/02 Re: [Freesurfer] Error Sourcing Freesurfer Huang, Yujing
2023/05/02 Re: [Freesurfer] Error Sourcing Freesurfer Turco, Isabella
2023/05/02 Re: [Freesurfer] mri_normalize error MP2RAGE Douglas N. Greve
2023/05/02 Re: [Freesurfer] Error Sourcing Freesurfer Kumar, Avnish
2023/05/02 [Freesurfer] mri_synthseg problem with CT... freesurver v 7.3.2 Gonzalo Rojas Costa
2023/05/02 [Freesurfer] Error Sourcing Freesurfer Turco, Isabella
2023/05/02 Re: [Freesurfer] QDEC Alternative Douglas N. Greve
2023/05/02 [Freesurfer] FreeSurfer VM Password Tan Yee Fan
2023/05/01 [Freesurfer] SynthSeg terminates with 'std::bad_alloc' error when using --threads option (>1) Giulio Siracusano
2023/05/01 Re: [Freesurfer] dcmunpack behavior with scouts Proulx, Jean Sebastien
2023/05/01 [Freesurfer] QDEC Alternative Lauren Stephens
2023/05/01 Re: [Freesurfer] Cannot find subject for recon-all Huang, Yujing
2023/05/01 [Freesurfer] Cannot find subject for recon-all Pedro henrique barradas
2023/05/01 Re: [Freesurfer] freeview rh and lh overlay_mask files both showing in the lh hemisphere Wang, Ruopeng
2023/05/01 Re: [Freesurfer] covariates in 2nd level anaysis Douglas N. Greve
2023/05/01 Re: [Freesurfer] contrast-FSGD question Douglas N. Greve
2023/05/01 [Freesurfer] VirtualBox VM Aqeel Mohamed
2023/04/29 [Freesurfer] Pass code for FS_7_2_0_Ubuntu_18_04_06.ova.7z Nathan Santana Schunk