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Hi Jack,
Longitudinal recon-all pipeline is available in Freesurfer 7.3.2.
To do longitudinal segmentation using the hippocampal subfield pipeline, it is
a requirement that the data have been processed with the longitudinal stream
Freesurfer.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Jackson Lee
Sent: Wednesday, July 12, 2023 10:25 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Longitudinal pipeline for FreeSurfer (v7.3.2)
External Email - Use Caution
Hi there,
I am hoping to process some longitudinal data using the longitudinal recon-all
pipeline available in FreeSurfer:
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Will this pipeline work for FreeSurfer v7.3.2? I cannot see any resources to
suggest this is the case.
Additionally, I am hoping to conduct some longitudinal analysis using the
hippocampal subfield pipeline:
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Would the best course of action be to run recon-all with the longitudinal
pipeline first (assuming it is applicable for freeSurfer v7.3.2) and then use
the longitudinal command for post-hoc subfield analysis?:
segmentHA_T1_long.sh <baseID> [SUBJECTS_DIR]
Thank you,
Jack
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