External Email - Use Caution Hi Akansha,
Can you try mri_segstats with option '--slabel subject hemi full_path_to_label' - https://secure-web.cisco.com/1_6KUKydZKeVMdsBFIq45SL3FnNI0J0vK1Oc1OGxgUci9ndTV9_ZapgsK_3NzhU8bMJOJY0uIz_LMPNGNff9ofQdi41lbl_z4LOot-PyyIAOkplCuie52WEoC25283K_FLApVE15eUqnyiaVpMRry06hp5_XGPLrNRm50KNv6woZtoPOOJi35Ep6MuRJkBknO4l1bQnjCysJ1851eBgeeHAOcGNtQnlEJSxyMSyXX9hlATC-lcdqDSa3tSwnR3HxF8HRuwC8fhqYKaAFcuhOJ6g/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fmri_segstats Best, Yujing -----Original Message----- From: [email protected] <[email protected]> On Behalf Of Akansha Mahesh Naraindas Sent: Thursday, June 29, 2023 3:47 PM To: Freesurfer support list <[email protected]> Subject: [Freesurfer] Extracting cortical thickness values for each subject using labels External Email - Use Caution Hi I have made custom labels to use as ROIs, I was wondering if there was any way to get thickness values at each vertex for a participant but just within the areas covered by specific label files, So from the lh.thickness.fwhm0.fsaverage.mgh file, would I be able to extract thickness values from this file, but just within the region covered by aparc-rh-046.label ? Do you know of a way to do this? Thanks Akansha _______________________________________________ Freesurfer mailing list [email protected] https://secure-web.cisco.com/1dxT14leTQ7Ksa3Sgg7FIgR2pgu40NDGUaD19UIbwV0y8ZNGQXR9amganjuB0SId6OhqDBw46PFd5Kmdnh5abFjWysy25h5PMuiUsdlGN4-OdtOaTmnQp8KjOQ3KkgnacR8yIuOjlGm_CYBjKu6UjS7tU1lMh9SCP_WHSbWmBeRfMCUF5EhEj5izMkzzylPS06ADMPR4zHJTRT-iU7sNdb9l6WNGj52ISkp6Uxcw9olaXCCVM0oOyNxMjOIhvYmHzRceA9xI42kCUtW3MLFFzfQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
