External Email - Use Caution Does 1mm mean 1 millimeter? I was in doubt! I am processing t1w anatomical sequences of subjects from the OASIS3 database. Each subject has many MRI images. My point is, freesurfer is excellent and I would like to apply in 2 thousand subjects. I would like to know if there is any way to improve the performance.
Em ter., 20 de jun. de 2023 às 11:15, Douglas N. Greve < dgr...@mgh.harvard.edu> escreveu: > External Email - Use Caution > > For 1mm data, FS will generally run in 5-10 hours. Are you talking about > high resolution data? > > On 6/20/2023 10:11 AM, Michelle Diniz wrote: > > External Email - Use Caution > Hey guys. I'm using FMRIprep on the OASIS3 database and I've noticed that > the processing time for each subject averages two days. 80% of that > processing is due to the freesurfer. I will need to analyze many resonance > images, more precisely the functional part. I tested SMRIprep and didn't > get a significant improvement in processing time. How are you getting > around this type of problem? How are they using freesurfer in a big dataset? > > -- > Michelle Diniz Lopes > > _______________________________________________ > Freesurfer mailing listfreesur...@nmr.mgh.harvard.edu*MailScanner has > detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1mvuK9FnyDxa-_zGCDCCDglPK7r6HT0974mgoHEODtIHixMIy4SHp4K1Nl6bxlmsf-_EX9lBHLtKv5Vvuy1IQgFzAYqc-vutZ7l-Tv6NDat3zWvdFEUjgg4Lfvc-AMKOOTEGsFrL59cwZI0GXR-f3OBG8iPrB6uSfeqdVgcQVYz1U4R2mo0G2ptvqVZLnhQ6pkHnQt8E8LQky1K3r4LBZlG2ewkPnPTDmBu6TP7K1xBPdSYx3aHIWynbAS1sYahAmA7GfQ6qu9NHrZZcNgs_sn3uiCuGFJWRGoa61E_FVwAn1Ke0Appjn8KhmcKFxcfhg_6GpMnlbxYbE8J9T7Ef2kw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > <https://secure-web.cisco.com/1qOlyBY-EW1phq7cja_yV9SaYanmwB__T9e4D6aXseSLG-Rm69dW3KTaulGGlHMCCLwIyu8dG8Jn48IbnUJo-rS0uHKFfgfK-xzTrQoNS_37wcDG9EiJ4Bfcfzi32yAnVvY9VJ32RXCwLmD4JMbxcUnAMTzOPcfdYd2BxMPk-YHqvqP1U8S0qBPPyyYVb5qtNEXwTxwOL8SYHy7WVDQcRZouMCL6P2w95CuOb4Is10XrFcYJd3965h3lbfvruLmARO6mscAzikpYfXTsQ0mM51Q/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1mvuK9FnyDxa-_zGCDCCDglPK7r6HT0974mgoHEODtIHixMIy4SHp4K1Nl6bxlmsf-_EX9lBHLtKv5Vvuy1IQgFzAYqc-vutZ7l-Tv6NDat3zWvdFEUjgg4Lfvc-AMKOOTEGsFrL59cwZI0GXR-f3OBG8iPrB6uSfeqdVgcQVYz1U4R2mo0G2ptvqVZLnhQ6pkHnQt8E8LQky1K3r4LBZlG2ewkPnPTDmBu6TP7K1xBPdSYx3aHIWynbAS1sYahAmA7GfQ6qu9NHrZZcNgs_sn3uiCuGFJWRGoa61E_FVwAn1Ke0Appjn8KhmcKFxcfhg_6GpMnlbxYbE8J9T7Ef2kw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1uXCJun8Ki0tHxEGCKuTd_CepkS41LlDatXAqKFMaGA_NZCRMmGa_NjnARWX3A-SjM7JPjrx7mI93qIRJuluHpMlFWQ8OIj7wzICM4asw9i7sFH0D-_cPyLXO0EGAgcoTaGWA_LKCfBMYQ2DSV2_0TvAZnXX0bvuCV6FWsSKrZG583g_NA2my2734IT1zS2S3htVgv3N-WrtYQaOmTGp-6quqBFBLSYuRPVCL5hTeqmOAefQ3WgZPRHoSptKrV4V1hkcs29P0B8bkvp9CN6VOMi2ISIk1LyXXQPl4v5wr1bEu5YK10hkuYCKcesQ-rQ-wSJDtuAiT53HxdxK6bBLZCQ/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1uXCJun8Ki0tHxEGCKuTd_CepkS41LlDatXAqKFMaGA_NZCRMmGa_NjnARWX3A-SjM7JPjrx7mI93qIRJuluHpMlFWQ8OIj7wzICM4asw9i7sFH0D-_cPyLXO0EGAgcoTaGWA_LKCfBMYQ2DSV2_0TvAZnXX0bvuCV6FWsSKrZG583g_NA2my2734IT1zS2S3htVgv3N-WrtYQaOmTGp-6quqBFBLSYuRPVCL5hTeqmOAefQ3WgZPRHoSptKrV4V1hkcs29P0B8bkvp9CN6VOMi2ISIk1LyXXQPl4v5wr1bEu5YK10hkuYCKcesQ-rQ-wSJDtuAiT53HxdxK6bBLZCQ/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > -- Michelle Diniz Lopes
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