External Email - Use Caution Hi Hamied
You can look at https://secure-web.cisco.com/1bnaZSruaFQGVYR6VQLh6aOpRfUAXWWdFgqdgPextIAFEWsy7HWq6OJhv9ZdHFilwH7UUfM6dYKejSIFciVLi0WyO3H5F5Nh7viI-v-nO3CxQ0cpJ0s1hKzp0KNag_NUd3H66ceI10Q0zEqdsxjf-ZKPT723g2Wal4od_ytCV64hneKuM_fQVWY4ovI7CUaX4niF-ogz5UiQLAhzFmijvUEMmseASDPqJdNBIXpNUZ2EQ79AazWWO_PJQbZJf_Rt9Rp_2bEsvzgzVehPMema0Nw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLongitudinalTwoStageModel https://secure-web.cisco.com/15FkmDqn8PH2TrtPz0MNOJ3GsSLi9E-nZojMgQPivW43V7f1BpJBwidLDy1sDrQxoj_TW-BUe7nDURMvyYlRc5D8ATytwtfbaT_UbR_CWYpcBjFqmuEF2zCqtIiGa8f_3J0NUf5U5pQ7Ma3ago-5qyU4QeXpbmeOkV2P0GMH6gmvl0K-Km9xFJyhWQKWu0emzXAWfnT5vlpQSBXZz1jEubfMFaO1g4IxAujkNAqte_j7P8VuoE7kCmtUVX_3LLQPKsu7vPukw4Qhjvud77euPlg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLongitudinalProcessing and also recon-all -help and search for longitudinal. Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Hamied Haroon Sent: Tuesday, June 27, 2023 11:02 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ??? External Email - Use Caution Thank you so much! Where do I find out how to run the longitudinal stream, please? Best wishes, Hamied From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> On Behalf Of Fischl, Bruce R.,PHD Sent: Tuesday, June 27, 2023 4:00 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ??? External Email - Use Caution you can also use our longitudinal stream that improves sensitivity and reliability. Run it after you have run the cross-sectional - it will improve your results considerably cheers Bruce ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Huang, Yujing <yhuan...@mgh.harvard.edu<mailto:yhuan...@mgh.harvard.edu>> Sent: Tuesday, June 27, 2023 10:11 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ??? External Email - Use Caution Hi Hamied, I believe you can use mri_segstats (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1KKsj4S_pzLppp0LWwzP9RNlWGOfH0UhR3SKmXq0KdAKjz0i7c43ubeh6qTzat84QRwEn1MbwMpOLk4x0IPRE4PdJNtXtWWkVArtG7PDe7MbFRTwIoKqnvTRbBgsYWqgHt3MXy2pJAADfFdkMnxf-y-Et7R1_7XwJ2dXHghL4PSyXGalrO7hUksbelF08foyi77WqkogbXp2nFVRP0c9EoJJGdee_wIJWUpzKM4enU7O9Lq97aCQK9JuAAwaNdPgJ3UL0QS5xkF-na2V3re7SIw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fmri_segstats [secure-web.cisco.com]<https://secure-web.cisco.com/1suY8rCw0HsLnOoUmHI6Sq3MowuajkWPxT4RlPjPnID7I1q0IfB3Tho0cLVUTS7LWQjM8MU5EBwIG2IVlvnLms_dGgXezhUHxGHbriizcwob7DyDteLO_wb21i9BGS6H8bcZ9wAczE9Wgtxx4ryJS7qK8AzXnEQvJIaUz_QynwGlMsbCMAaJF4_bXKp2BxiUyIYAy2kM1fMPOqY8mVZdlInPsah0dEeqyeonTkkyve9VG78ZoM49sZVIDrp9pAWO4DeavEk1i-BGfuB15cLw13O-3BHBNF8oLH5qSj3evoRJI5bbGFGfzltLpPHyzISfz/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2Fsecure-web.cisco.com%2F1t9vh-Oj21vw4Rayc9EasX_SVka7JZBcaU4jDLdDJ7U4SGdAuLh5BS8dLNGVpAf430Gw4__m6BXEnp-Jui9IuuO9MN4XrwpoH_KqirdZeOt1bGzW0cue0R631HMoXuhIMj0_qz2YcWlfGc5V-FzJe22GTCvPQZ6unps7oDItH9JMmeECj7tbwlF0zAw6VMjNuv08F8t38j02uVdA3wQP4hgweClzzaYHuow_GfULkhXhGPO8DzsmrU2MkfZ8qYrsQ%2Fhttps%2A3A%2A2F%2A2Fsurfer.nmr.mgh.harvard.edu%2A2Ffswiki%2A2Fmri_segstats__%3BJSUlJSU%21%21PDiH4ENfjr2_Jw%21CJSENOIlg85DMUpaPAeorq55UZT7VMEmCvA2s0aNUq9w9M9eBiNcF-SClRd_kT4-xhws_cdYA5nxIMcobV_8cY7HUPYEAU3DxQ%24>) to generate the stats. Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> On Behalf Of Hamied Haroon Sent: Tuesday, June 27, 2023 7:12 AM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Longitudinal structural analysis in FreeSurfer ??? External Email - Use Caution Hello, I've run recon-all on patient T1s acquired at different timepoints after a neurological insult, in FreeSurfer v7.3.2 I want to analyse any change in the volume, surface area and average thickness of specific regions across time in each patient. Can I do this in FreeSurfer? Many thanks. Best wishes, Hamied Dr Hamied A Haroon, MSc, PhD, MInstP Research Associate in Biomedical Magnetic Resonance Imaging The University of Manchester
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