External Email - Use Caution
On 5/28/2023 1:32 PM, Ruifeng Dong wrote:
External Email - Use Caution
Hi all,
I am running freesurfer 7.3.2 for segmentation of T1 data. It seems
like still using the old skull stripping tools by default. How should
we change it to using synthstrip? (Question 1)
Add -synthstrip
Also, is it a good idea to also turn on the --no-csf flag for cortex
and subcortical segmentation? (Question 2)
If using synthstrip, do we still need the -T2 option for better
treatment of dura regions? (Question 3)
Thank you.
Best,
Ruifeng
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