External Email - Use Caution
Thank you so much!
Where do I find out how to run the longitudinal stream, please?
Best wishes,
Hamied
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Fischl, Bruce R.,PHD
Sent: Tuesday, June 27, 2023 4:00 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
you can also use our longitudinal stream that improves sensitivity and
reliability. Run it after you have run the cross-sectional - it will improve
your results considerably
cheers
Bruce
________________________________
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Huang, Yujing
<yhuan...@mgh.harvard.edu<mailto:yhuan...@mgh.harvard.edu>>
Sent: Tuesday, June 27, 2023 10:11 AM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hi Hamied,
I believe you can use mri_segstats (MailScanner has detected a possible fraud
attempt from "secure-web.cisco.com" claiming to be
https://secure-web.cisco.com/1DvoR9gsljZsd_tn6iXlHFCEa7oldorHsKL8rE7nOuo8r9Z-Ad38seGyEmXZqVz36H_S_Vc3UaU79QDPAGUdsBnRdz9hU0mOVc9h_olsdsGWc6Q4wDQesVPCvwJ5dPPvODmTP70MfC3R4PIOAyFwlrfQtl13Dkvff2TjeQS5oBnXni_ZJKZVpLwfUSOoALx28b_mtlJByDYDOUhHcpz8qhRz3QLDbtuukFUOqwSTmOqX_zHfnArJYb_5nqtajKOyNZfoZsnSdjekTkOj-_2Q6ymipUaoavmUprhjRTdjr3N64MOEi2gid_vNAcxomY7qO/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fmri_segstats
[secure-web.cisco.com]<https://secure-web.cisco.com/1TUFzz0uyE5moSWPGLU-e8nsCOIhDnHNbOhIggiy3Jbk7CCh9v-jwSkqueuN3hgEWRyObAH00awbdP_0tLM9Y3wcX0uiGWQg8PkrfT613jf7_KE9bKXfrhtqMo_lDudqZWt1ln-rR6aqsFDbvbLAVPxsJjkeQDovFix9RSLPi8BgFeZ4WhxQYyxAirhmLjTOcwoamjTR439_sGYxl-ncwozCkxNrDJJW9v4wRf-qXiqc3kv5HzAX2qGLQt3yAcJuJ9gpYNYFhdsBaoJT9T776izdITnQpA1hEAn7tQ1sp1K96zQph8S_Q1UJY82_c51A_/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2Fsecure-web.cisco.com%2F1t9vh-Oj21vw4Rayc9EasX_SVka7JZBcaU4jDLdDJ7U4SGdAuLh5BS8dLNGVpAf430Gw4__m6BXEnp-Jui9IuuO9MN4XrwpoH_KqirdZeOt1bGzW0cue0R631HMoXuhIMj0_qz2YcWlfGc5V-FzJe22GTCvPQZ6unps7oDItH9JMmeECj7tbwlF0zAw6VMjNuv08F8t38j02uVdA3wQP4hgweClzzaYHuow_GfULkhXhGPO8DzsmrU2MkfZ8qYrsQ%2Fhttps*3A*2F*2Fsurfer.nmr.mgh.harvard.edu*2Ffswiki*2Fmri_segstats__;JSUlJSU!!PDiH4ENfjr2_Jw!CJSENOIlg85DMUpaPAeorq55UZT7VMEmCvA2s0aNUq9w9M9eBiNcF-SClRd_kT4-xhws_cdYA5nxIMcobV_8cY7HUPYEAU3DxQ$>)
to generate the stats.
Best,
Yujing
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Hamied Haroon
Sent: Tuesday, June 27, 2023 7:12 AM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hello,
I've run recon-all on patient T1s acquired at different timepoints after a
neurological insult, in FreeSurfer v7.3.2
I want to analyse any change in the volume, surface area and average thickness
of specific regions across time in each patient. Can I do this in FreeSurfer?
Many thanks.
Best wishes,
Hamied
Dr Hamied A Haroon, MSc, PhD, MInstP
Research Associate in Biomedical Magnetic Resonance Imaging
The University of Manchester
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