External Email - Use Caution
lta_convert looks fine in /Applications/freesurfer/7.4.1/.
Your ‘export FREESURFER_HOME=Applications/freesurfer/7.4.1’ doesn’t have the
leading ‘/’.
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Misque Boswell
Sent: Monday, July 3, 2023 12:30 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Error Help
External Email - Use Caution
Thank you, Yujing. Here it is:
Misques-MBP-3 / % /Applications/freesurfer/7.4.1/bin/lta_convert -all-info
7.4.1
ProgramName: lta_convert ProgramArguments:
/Applications/freesurfer/7.4.1/bin/lta_convert -all-info ProgramVersion: 7.4.1
TimeStamp: 2023/07/03-16:28:36-GMT BuildTime: Jun 14 2023 00:15:19
BuildStamp: freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 User:
misqueboswell Machine: Misques-MBP-3.local Platform: Darwin PlatformVersion:
22.2.0 CompilerName: Clang CompilerVersion: 12.0.0
Misque
On Jul 3, 2023, at 8:55 AM, Huang, Yujing
<yhuan...@mgh.harvard.edu<mailto:yhuan...@mgh.harvard.edu>> wrote:
External Email - Use Caution
Can you run the following at prompt?
‘Applications/freesurfer/7.4.1/bin/lta_convert -all-info’
I’m not a Mac user. Do you need ‘/’ in front of ‘Application’?
Yujing
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Misque Boswell
Sent: Monday, July 3, 2023 11:44 AM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Error Help
External Email - Use Caution
Hello Yujing,
Thank you for your response. I followed the directions for setup and sourced
SetUpFreeSurfer.sh as you stated. All goes as planned up to this point.
Misques-MBP-3 / % export FREESURFER_HOME=Applications/freesurfer/7.4.1
Misques-MBP-3 / % source $FREESURFER_HOME/SetUpFreeSurfer.sh
-------- freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME Applications/freesurfer/7.4.1
FSFAST_HOME Applications/freesurfer/7.4.1/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR Applications/freesurfer/7.4.1/subjects
MNI_DIR Applications/freesurfer/7.4.1/mni
FSL_DIR /Users/misqueboswell/fsl
Can you check where your recon-all is and if lta_convert is in the distribution?
1. which recon-all
Misques-MBP-3 / % which recon-all
Applications/freesurfer/7.4.1/bin/recon-all
2. ls -l <recon-all_path>/lta_convert
lta_convert executable is in the "Applications/freesurfer/7.4.1/bin/"
(rwxr-xr-x 1 root wheel 2613752 Jun 13 21:21 lta_convert)
Thank you again for your help!
Misque
On Jul 3, 2023, at 6:26 AM, Huang, Yujing
<yhuan...@mgh.harvard.edu<mailto:yhuan...@mgh.harvard.edu>> wrote:
Yujing
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com"
claiming to be
https://secure-web.cisco.com/1W8Y5FDkCA3tOZ271gWLpIlPdG2T906rfoisr3W2NYTYuDI9T2oBqE1ONUd1rJ9sjPJQJqE-gC0wmVJT69fLU46PRGfDItJ4HxONY8tT_LuYNBKVeN949pzCyqcfQRycTRF6x2QDwiP3fzBDIoaWnfLm9YdZTvIgQHMAQg4-dmKSdXQG8xmZSO0IW2yh-qjn3lLzNjM6mvKldTF0-7fN_xi9JXME7J3kbopZgPBjt_5x3szVdkCAa0e05rPa62eNU_Yif1IguslbyKVssCK0D3g/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer__;!!LIr3w8kk_Xxm!sN-QzRIVQgauHYkWRHOlLN73RfQ78tapdXHzS3ly-UvRXnjZHsJ2Jhr1Mp4d4MTXN_BGoy7Q81Ih8zTkO1twlBA7$<https://secure-web.cisco.com/1llhkHPyg1VHc464O3o5O51eCxsFetE01_fzaJf-QIvsGUJ2Z8n4uhtcqDZgb3amaPKTBrgT-qsrAgFgrZZ34BnHCeES7Bl-2eaXGAVT2vKg_lCx_lurTuwNqGSCn5w4b5Pp-Tg86dmQI4KoL7QVj0inQ90zCijqIWXqAquT8y1snWc311widSuHdHE9PikSUNMOCvolup6hHiyTfHORqzFJ_HNKsZrASMNIaprTT9KLDBfvG5WeJCYUOPOXl49OIeGvgB0fvMA1PhK01YaxwT_dHwiYJFvuY9ZZE7P_-vv4KYWA6oFsyq5wL7Yq1WzTFoJj1BBLkArETihKptxgSng/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer__%3B%21%21LIr3w8kk_Xxm%21sN-QzRIVQgauHYkWRHOlLN73RfQ78tapdXHzS3ly-UvRXnjZHsJ2Jhr1Mp4d4MTXN_BGoy7Q81Ih8zTkO1twlBA7%24>
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be
https://secure-web.cisco.com/1A6KZVx8TqfWKs-AdkN379np_WF5kUom_tjRj7RRhyWEKSofW71XjhEyGM_nPt3jL0NlDhYVMBboyyiKGQrGThay5P5XIq04A5I4SDaWCbfihI2zcD7kd_14mhivChgLfZePWiQf4ut4bt2XQUpjEB0E4Z9pOpOia38anYc-40GiJC1iGt_dmJ3mVyGg-DnoKtjKLxDoy3B-lkNmcOF4LaybnNHoM-OrauGEKSinb0XQHRgAjhZLRu6Fk_4AhXAaoimKZthlD-r0wjPB9R8vLlw/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline__;!!LIr3w8kk_Xxm!sN-QzRIVQgauHYkWRHOlLN73RfQ78tapdXHzS3ly-UvRXnjZHsJ2Jhr1Mp4d4MTXN_BGoy7Q81Ih8zTkO_C_9O2O$<https://secure-web.cisco.com/1Ez3WZIdQcCyi40R1pX-cwpSk962hD3s2Oy1FCIW1pfxbHqxTuXRiCOGSyGq4QaVy8_-Xj6Zsk2EmC9zPR75LnXn-LPvyHm1Ihe2GDaVZI00fSWRQmcjRMDNPN1tC5cxYp_mO7yDEXlIV7DUFB1sMgDXJVNo0r1lxO84r9OZV1RKiVjIpugcePg0Agm7JhyQs7EWYoUJ6DqlXh8Af5LRgGnXRiRfpfv7A_7PWQpriTZq5cUSQRoT-wD66rfU848kYDcyeyts7Txoh5KwH_gbvgQnptkDoHZfEt6F0NVIu_n3HRbpxeQCIWiH1IVOv6OBwN5UQ2xU78qGbidHw1bOKhg/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline__%3B%21%21LIr3w8kk_Xxm%21sN-QzRIVQgauHYkWRHOlLN73RfQ78tapdXHzS3ly-UvRXnjZHsJ2Jhr1Mp4d4MTXN_BGoy7Q81Ih8zTkO_C_9O2O%24>
<MailScanner has detected a possible fraud attempt from "secure-web.cisco.com"
claiming to be
https://secure-web.cisco.com/1A6KZVx8TqfWKs-AdkN379np_WF5kUom_tjRj7RRhyWEKSofW71XjhEyGM_nPt3jL0NlDhYVMBboyyiKGQrGThay5P5XIq04A5I4SDaWCbfihI2zcD7kd_14mhivChgLfZePWiQf4ut4bt2XQUpjEB0E4Z9pOpOia38anYc-40GiJC1iGt_dmJ3mVyGg-DnoKtjKLxDoy3B-lkNmcOF4LaybnNHoM-OrauGEKSinb0XQHRgAjhZLRu6Fk_4AhXAaoimKZthlD-r0wjPB9R8vLlw/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline__;!!LIr3w8kk_Xxm!sN-QzRIVQgauHYkWRHOlLN73RfQ78tapdXHzS3ly-UvRXnjZHsJ2Jhr1Mp4d4MTXN_BGoy7Q81Ih8zTkO_C_9O2O$<https://secure-web.cisco.com/1Ez3WZIdQcCyi40R1pX-cwpSk962hD3s2Oy1FCIW1pfxbHqxTuXRiCOGSyGq4QaVy8_-Xj6Zsk2EmC9zPR75LnXn-LPvyHm1Ihe2GDaVZI00fSWRQmcjRMDNPN1tC5cxYp_mO7yDEXlIV7DUFB1sMgDXJVNo0r1lxO84r9OZV1RKiVjIpugcePg0Agm7JhyQs7EWYoUJ6DqlXh8Af5LRgGnXRiRfpfv7A_7PWQpriTZq5cUSQRoT-wD66rfU848kYDcyeyts7Txoh5KwH_gbvgQnptkDoHZfEt6F0NVIu_n3HRbpxeQCIWiH1IVOv6OBwN5UQ2xU78qGbidHw1bOKhg/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline__%3B%21%21LIr3w8kk_Xxm%21sN-QzRIVQgauHYkWRHOlLN73RfQ78tapdXHzS3ly-UvRXnjZHsJ2Jhr1Mp4d4MTXN_BGoy7Q81Ih8zTkO_C_9O2O%24>
> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
