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Thank you so much,
I previously used the workaround to uninstall and reinstall tensorflow that was
posted on the forum on 12th December 2022 for 7.3.2. This workaround worked for
the development version also this evening, but several tools are failing,
namely SynthSR. When running mri_synthsr, I get the following errors:
mri_synthsr
Traceback (most recent call last):
File "/Applications/freesurfer/dev/python/scripts/mri_synthsr", line 10, in
<module>
import surfa as sf
File
"/Applications/freesurfer/dev/python/lib/python3.8/site-packages/surfa/__init__.py",
line 19, in <module>
from .image import Volume
File
"/Applications/freesurfer/dev/python/lib/python3.8/site-packages/surfa/image/__init__.py",
line 1, in <module>
from .framed import FramedImage
File
"/Applications/freesurfer/dev/python/lib/python3.8/site-packages/surfa/image/framed.py",
line 24, in <module>
from surfa.image.interp import interpolate
File "surfa/image/interp.pyx", line 1, in init surfa.image.interp
ValueError: numpy.ndarray size changed, may indicate binary incompatibility.
Expected 96 from C header, got 80 from PyObject
I am not sure if this is due to un/re installation of tensorflow, or if anyone
has any suggestions/if I should follow up with Eugenio directly.
Cheers!
Annabel
Annabel Sorby-Adams, PhD
Postdoctoral Research Fellow
Department of Neurology
Massachusetts General Hospital
Lunder 6 55 Fruit Street, Boston MA
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Pager ID 23944
From: fsbuild <fsbu...@contbay.com>
Date: Wednesday, 14 June 2023 at 19:08
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Freesurfer Development Version Apple M1/2 Chip
Compatability
External Email - Use Caution
The link to msg 74015 did not work for me in the freesurfer mail list archive,
so I don’t know how that relates to what you are inquiring about. But the
freesurfer Intel Mac binaries generally run (automatically) using the built-in
Rosetta emulation environment provided with M1/M2 silicon Macs. Not clear to
me what you are trying to do that would prevent you from running the Intel
binaries.
-R.
On Jun 14, 2023, at 18:20, Sorby-Adams, Annabel <asorby-ad...@mgh.harvard.edu>
wrote:
External Email - Use Caution
Dear Freesurfers,
A workaround was previously posted for Apple M1/2 processors to download and
run the 7.3.2 release of Freesurfer (here MailScanner has detected a possible
fraud attempt from "secure-web.cisco.com" claiming to be
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Unfortunately, I require some tools currently available in the development
version. Is there a possible workaround for Apple M1/2 chips and Freesurfer dev
compatibility?
Cheers!
Annabel
Annabel Sorby-Adams, PhD
Postdoctoral Research Fellow
Department of Neurology
Massachusetts General Hospital
Lunder 6 55 Fruit Street, Boston MA
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