External Email - Use Caution Hello FreeSurfer Developers,
I am trying to use dcmunpack to transform dicom images to a nifti format inside a FSFAST formatted directory ( https://secure-web.cisco.com/1JV-FemocV4fiLoKofgFHZ2hQTt_nlpR8LAqJEXvFr3d88Y9d8_5ARW5ZwWfjra1Get0gYobq4LmRSdujguw3Lo8y_WXDV6ESU4ApxhlMZ7JD5AIUzRBJIoJyaHjAFeqrP2rw2iPUB2PkBukeZLPJKT2EKeWxFBBlaMczY6mQKlNi9vPHMD9NIGJc9AkxEeZnUBPjIbTBdnZNtPEUc1tZIW8XtTtgSk8bx2puWstu5z3lOGqpRN1veJpOZif_VOkQhd8xIs0a2I4PDLls1l2RQG9W7-RQQaPBRMBwtnvlJ1DXZY9ir7Z0sSJXxe6yIXLL0AqJvxXoBAvqTqJkhjDXOw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Ffsfastrestingstatetutorial), however I am having issues understanding how to use properly the -run argument. This is the command I am trying to use: dcmunpack -src fMRI_dir -targ sessionid -fsfast -run 2 rest nii.gz f.nii.gz I assume I am making some mistakes with the command, specially with the run arguments since this is the error that I got in the terminal: ERROR: could not find run 2 in data My directory contains fMRIs downloaded directly from the ADNI database and grouped in folders following this structure: /fMRI_dir/subject_id/Axial_rsfMRI/date/image_uid/dicom images I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to solve this? 1) FreeSurfer version: freesurfer_ubuntu20-7.4.0_amd64.deb 2) Platform: Ubuntu 20.04 in WSL Thanks for your help.
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