External Email - Use Caution Hi Misque,
I see the error in your recon-all.log “ 7.4.1 (freesurfer-macOS-darwin_x86_64-7.4.1-20230614-7eb8460) ERROR: Executable 'lta_convert -all-info failed! Is it missing from the distribution?' “ Here is some information on how to set up Freesurfer on Mac - https://secure-web.cisco.com/1Wx0z_tw2w2WyPGsxqDZHPgpnq18mkkoGjEO-ae48MqpV3_1StPfPI4r5H7H0hbCbSVNdgcp7PWcKkyT6FlrNn3EFP_Oay79L28d-j6NygNRCf_DFPGdtrJOYmBU5UiYxnG-EcX8aw_JUQImMgA5sOb-hKPWT5mXCVpX79xiILUYGwY3NtVNCci-wP7bMWL8qglsn72H-HXDYgA8Nxw1d6udZhE2KfVGyO94Rv9eYfh1brypJRKE2xNOsTWaO_lTco196JDgT-ql7g5VtYqSFpg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FSetupConfiguration_Mac I’m assuming that you sourced SetUpFreeSurfer.sh from your Freesurfer install directory. Can you check where your recon-all is and if lta_convert is in the distribution? 1. which recon-all 2. ls -l <recon-all_path>/lta_convert Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Misque Boswell Sent: Sunday, July 2, 2023 8:40 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Error Help External Email - Use Caution Hi, I am new to FS and recently downloaded the package per instructions on your site. I set up the path and everything seems to be fine until I attempt to use any functions. I have searched for answers on this error, but I cannot seem to find anything so I am hoping you can direct me in fixing this. I am attaching the error log. I also tried to preprocess “bert” and got the same message. Thank you! Misque
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
