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• [Freesurfer] Differences between lme_mass_fit_vw and lme_mass_fit_Rgw Dan Levitas
  • Re: [Freesurfer] Differences between lme_mass_fit_vw and lme_mass_fit_Rgw Reuter, Martin,Ph.D.
  • Re: [Freesurfer] Differences between lme_mass_fit_vw and lme_mass_fit_Rgw Dan Levitas
• [Freesurfer] Registering Two Anatomical Images Andrew Jahn
  • Re: [Freesurfer] Registering Two Anatomical Images Douglas N. Greve
• [Freesurfer] Become a member of the International Society for Tractography (IST) Maxime Descoteaux
• [Freesurfer] Calculating intensity of Individual voxel ERNEST KISSI
  • Re: [Freesurfer] Calculating intensity of Individual voxel Huang, Yujing
  • Re: [Freesurfer] Calculating intensity of Individual voxel Gaurav Ambwani
  • Re: [Freesurfer] Calculating intensity of Individual voxel Douglas N. Greve
  • Re: [Freesurfer] Calculating intensity of Individual voxel Gaurav Ambwani
  • Re: [Freesurfer] Calculating intensity of Individual voxel ERNEST KISSI
  • Re: [Freesurfer] Calculating intensity of Individual voxel Huang, Yujing
• [Freesurfer] MRI watershed error Gaurav Ambwani
  • Re: [Freesurfer] MRI watershed error Douglas N. Greve
  • Re: [Freesurfer] MRI watershed error Gaurav Ambwani
  • Re: [Freesurfer] MRI watershed error Gaurav Ambwani
  • Re: [Freesurfer] MRI watershed error Gaurav Ambwani
  • Re: [Freesurfer] MRI watershed error Douglas N. Greve
  • Re: [Freesurfer] MRI watershed error Gaurav Ambwani
  • Re: [Freesurfer] MRI watershed error Gaurav Ambwani
  • Re: [Freesurfer] MRI watershed error Douglas N. Greve
  • Re: [Freesurfer] MRI watershed error Tregidgo, Henry
• [Freesurfer] Renaming Freesurfer subject directories for data sharing Dan Fitch
  • Re: [Freesurfer] Renaming Freesurfer subject directories for data sharing Douglas N. Greve
• [Freesurfer] freesurfer launching error yunus soleymani
  • Re: [Freesurfer] freesurfer launching error fsbuild
• [Freesurfer] Brain in a Box Hebah Tanveer
  • Re: [Freesurfer] Brain in a Box Wighton, Paul
  • Re: [Freesurfer] Brain in a Box Huang, Yujing
  • Re: [Freesurfer] Brain in a Box Huang, Yujing
  • Re: [Freesurfer] Brain in a Box Douglas N. Greve
• [Freesurfer] recon-all clinical : usage with contrast-enhanced T1-weighted images? Barbara Bellenberg
  • Re: [Freesurfer] recon-all clinical : usage with contrast-enhanced T1-weighted images? Gopinath, Karthik
  • Re: [Freesurfer] recon-all clinical : usage with contrast-enhanced T1-weighted images? Iglesias Gonzalez, Juan E.
• [Freesurfer] BIANCA Sensitivity/Robustness to non-brain material in skull-strip CRISTIAN MOJICA
  • Re: [Freesurfer] BIANCA Sensitivity/Robustness to non-brain material in skull-strip Douglas N. Greve
• [Freesurfer] Help: when will the next version of FreeSurfer become available? Tran, Kevin (NIH/NIMH) [E]
  • Re: [Freesurfer] Help: when will the next version of FreeSurfer become available? fsbuild
• [Freesurfer] Does motion correction command mc-sess do censoring of high motion timepoints? Possidente, Thomas
  • Re: [Freesurfer] Does motion correction command mc-sess do censoring of high motion timepoints? Douglas N. Greve
• [Freesurfer] PETSurfer: pvc'ed and scaled output nifti image Sneha Pandya
  • Re: [Freesurfer] PETSurfer: pvc'ed and scaled output nifti image Douglas N. Greve
  • Re: [Freesurfer] PETSurfer: pvc'ed and scaled output nifti image Sneha Pandya
• [Freesurfer] cluster area from mri_surfcluster and read_curv are inconstant wangzhiwei3233
  • Re: [Freesurfer] cluster area from mri_surfcluster and read_curv are inconstant Douglas N. Greve
• [Freesurfer] The Affective Neuroscience Project of the Midlife in the U.S. (MIDUS) study is recruiting a multimodal imaging scientist STACEY M SCHAEFER
• [Freesurfer] TRACULA multiple sessions output question Fotiadis, Panagiotis
  • Re: [Freesurfer] TRACULA multiple sessions output question Fotiadis, Panagiotis
• [Freesurfer] Cannot find mri/transforms/talairach.m3z file Dan Levitas
  • Re: [Freesurfer] Cannot find mri/transforms/talairach.m3z file Douglas N. Greve
  • Re: [Freesurfer] Cannot find mri/transforms/talairach.m3z file Dan Levitas
  • Re: [Freesurfer] Cannot find mri/transforms/talairach.m3z file Douglas N. Greve
  • Re: [Freesurfer] Cannot find mri/transforms/talairach.m3z file Dan Levitas
• [Freesurfer] Transformed geometry does not match Yasmine Salman
  • Re: [Freesurfer] Transformed geometry does not match Douglas N. Greve
• [Freesurfer] Issue with cortical data extraction for mkanalysis-sess O'Dor, Sarah
  • Re: [Freesurfer] Issue with cortical data extraction for mkanalysis-sess Douglas N. Greve
• [Freesurfer] negative values converting mgz files to nifty Nina Rouhani
  • Re: [Freesurfer] negative values converting mgz files to nifty Douglas N. Greve
• [Freesurfer] Bug in mri_convert reslice-like with 4D images Iglesias Gonzalez, Juan E.
  • Re: [Freesurfer] Bug in mri_convert reslice-like with 4D images Douglas N. Greve
  • Re: [Freesurfer] Bug in mri_convert reslice-like with 4D images fsbuild
• [Freesurfer] Incoporating synthstrip and synthseg into recon-all Dan Levitas
  • Re: [Freesurfer] Incoporating synthstrip and synthseg into recon-all Hoffmann, Malte,PhD
  • Re: [Freesurfer] Incoporating synthstrip and synthseg into recon-all Dan Levitas
  • Re: [Freesurfer] Incoporating synthstrip and synthseg into recon-all Dan Levitas
  • Re: [Freesurfer] Incoporating synthstrip and synthseg into recon-all Hoffmann, Malte,PhD
• [Freesurfer] fs_temp_file: Command not found Cameron, Jack
  • Re: [Freesurfer] fs_temp_file: Command not found Huang, Yujing
• Re: [Freesurfer] mri_fuse_segmentation error: could not open file Tommaso Cusolito S319624
• [Freesurfer] fmriprep and freesurfer license Patterson, Dianne K - (dkp)
• [Freesurfer] How to get the parcellations to the initial space as before running recon all Reji, A. (Amal, Student M-EE)
  • Re: [Freesurfer] How to get the parcellations to the initial space as before running recon all Douglas N. Greve
  • Re: [Freesurfer] How to get the parcellations to the initial space as before running recon all Douglas N. Greve
• [Freesurfer] Call for applications: LINC fellows program 2024-25 Yendiki, Anastasia
• [Freesurfer] License for FreeSurfer 5.x Rafael Navarro
  • Re: [Freesurfer] License for FreeSurfer 5.x fsbuild
• [Freesurfer] SynthSR problem Tabasi, Farhad
  • Re: [Freesurfer] SynthSR problem fsbuild
• Re: [Freesurfer] Recon-all for a common template Chen Yang
  • Re: [Freesurfer] Recon-all for a common template Douglas N. Greve
  • Re: [Freesurfer] Recon-all for a common template Douglas N. Greve
  • Re: [Freesurfer] Recon-all for a common template Douglas N. Greve
  • Re: [Freesurfer] Recon-all for a common template Douglas N. Greve
• [Freesurfer] freesurfer coordinate systems error: mismatch region hippocampal atlas in matlab and freeview for high resolution Le, Jarod
• [Freesurfer] MAC compatibilty Silvia Montanari
  • Re: [Freesurfer] MAC compatibilty fsbuild
• [Freesurfer] Research Technician positions in the FreeSurfer lab Player, Allison A. Stevens
• [Freesurfer] squirrel data sharing format available in beta Gregory Book
• [Freesurfer] run_samseg: Optimizer: maximalDeformation is too small; stopping; killed Ringki Marie Siewert
  • [Freesurfer] brain volumetry via Samseg and recon-all Ringki Marie Siewert
  • Re: [Freesurfer] brain volumetry via Samseg and recon-all Koen Van Leemput
  • [Freesurfer] run_samseg: Optimizer: maximalDeformation is too small; stopping; killed Stefano Cerri
• [Freesurfer] Intensity affected after using -c flag in mri_convert ERNEST KISSI
  • Re: [Freesurfer] Intensity affected after using -c flag in mri_convert Douglas N. Greve
• Re: [Freesurfer] fspalm error Stefano Delli Pizzi
• [Freesurfer] Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus Ahsan Ali
  • Re: [Freesurfer] Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus Fischl, Bruce R.,PHD
  • [Freesurfer] Fwd: Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus Ahsan Ali
  • Re: [Freesurfer] Fwd: Atlas Used in FreeSurfer for Segmentation of Fornix, Corpus Callosum, Hippocampus Douglas N. Greve
• [Freesurfer] PhD candidate position - high-resolution imaging of the human claustrum Zaretskaya, Natalia (natalia.zaretsk...@uni-graz.at)
• [Freesurfer] Probability density function Jingjing Liu
  • Re: [Freesurfer] Probability density function Douglas N. Greve
• [Freesurfer] Group Stats for hipposubfields, brainstem and amygdalar Carina Obermüller
  • Re: [Freesurfer] Group Stats for hipposubfields, brainstem and amygdalar Carina Obermüller
  • Re: [Freesurfer] Group Stats for hipposubfields, brainstem and amygdalar Nolan, Jackson
  • Re: [Freesurfer] Group Stats for hipposubfields, brainstem and amygdalar fsbuild
• [Freesurfer] how to resolve recon-all stopping at fill step Dong, Yilei
• [Freesurfer] Request to Edit Page (if possible) Emily Popa
• [Freesurfer] Freesurfer on a high-performance cluster (HPC) - MATLAB runtime Camilo Castelblanco Riveros
• [Freesurfer] Unequal size groups stdp82
  • Re: [Freesurfer] Unequal size groups Douglas N. Greve
• [Freesurfer] mri_watershed Error: read failed Schroder, Kirsten
• [Freesurfer] Valid options.txt file for mris_pmake (and maybe .dsh.yml too) Garikoitz Lerma-Usabiaga
• [Freesurfer] error using mri_em_register Michal Zamberg-Elad
  • Re: [Freesurfer] error using mri_em_register Huang, Yujing
• [Freesurfer] Issue related to converting .nii.gz file to .mgz using FreeSurfer's mri_convert Tsigaras, Thanos
  • Re: [Freesurfer] Issue related to converting .nii.gz file to .mgz using FreeSurfer's mri_convert Huang, Yujing
• [Freesurfer] Hippocampus subfield LUT karl landheer
  • Re: [Freesurfer] Hippocampus subfield LUT Douglas N. Greve
• [Freesurfer] Harmonization (Site/Scanner) for FreeSurfer Area Data Tejaswi D. Sudhakar
• [Freesurfer] Subcortical surfaces from volume features. Sam Maddox (CMP - Postgraduate Researcher)
• Re: [Freesurfer] Contrast files - 2 groups, 4 covariates Liliana Wu
  • Re: [Freesurfer] Contrast files - 2 groups, 4 covariates Douglas N. Greve
• [Freesurfer] mri_segment_hypothalamic_subunits 7.4.1 issue Antonio Di Renzo
• [Freesurfer] Contrast files - 2 groups, 4 covariates Liliana Wu
  • Re: [Freesurfer] Contrast files - 2 groups, 4 covariates Douglas N. Greve
• [Freesurfer] MCR install for parcellation Antonio Di Renzo
  • Re: [Freesurfer] MCR install for parcellation fsbuild
• [Freesurfer] Postdoc Positions in Cognitive Neuroscience/ Neuroimaging Genomics X K
• [Freesurfer] Incorporating hi-res T2w image in longitudinal pipeline Raikes, Adam C - (adamraikes)
• [Freesurfer] outcome directions of longitudinal two stage model L
  • Re: [Freesurfer] outcome directions of longitudinal two stage model Douglas N. Greve
  • Re: [Freesurfer] outcome directions of longitudinal two stage model L
• Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Dan Levitas
  • Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Dan Levitas
• [Freesurfer] ERROR: cannot find AntsN4BiasFieldCorrectionFs in path Christine Farrugia
  • Re: [Freesurfer] ERROR: cannot find AntsN4BiasFieldCorrectionFs in path Huang, Yujing
• Re: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt Huang, Yujing
  • Re: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt LYU, TIANXIANG
  • Re: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt Huang, Yujing
  • Re: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt LYU, TIANXIANG
• [Freesurfer] INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE IN HEALTHCARE (AIiH) Jiaxiang ZHANG
  • [Freesurfer] INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE IN HEALTHCARE (AIiH) Jiaxiang ZHANG
• [Freesurfer] SynthSR Changes Dimension AmirHussein Abdolalizadeh
• Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Dan Levitas
• [Freesurfer] surface and cortical thickness normalization yunus soleymani
  • Re: [Freesurfer] surface and cortical thickness normalization Fischl, Bruce R.,PHD
  • Re: [Freesurfer] surface and cortical thickness normalization Douglas N. Greve
• [Freesurfer] Difference between 2 ways to set up fsgd file and contrasts Lydia Chung
  • Re: [Freesurfer] Difference between 2 ways to set up fsgd file and contrasts Douglas N. Greve
• Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Dan Levitas
  • Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Reuter, Martin,Ph.D.
  • Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Diers, Kersten /DZNE
• [Freesurfer] brain volumes normalization yunus soleymani
  • Re: [Freesurfer] brain volumes normalization Douglas N. Greve
  • [Freesurfer] brain volumes normalization yunus soleymani
• Re: [Freesurfer] [FreeSurfer] recon-all exited with error - watershed error Krystal Xiwing Yau
• [Freesurfer] Registration in PETSurfer Ruben Dörfel
  • Re: [Freesurfer] Registration in PETSurfer Douglas N. Greve
• [Freesurfer] Error: Label FG1.mpm.vpnl does not exist in SUBJECTS_DIR fsaverage! Pamela González Méndez
  • Re: [Freesurfer] Error: Label FG1.mpm.vpnl does not exist in SUBJECTS_DIR fsaverage! Huang, Yujing
• [Freesurfer] Problem running recon-all Gregory Book
  • Re: [Freesurfer] Problem running recon-all Huang, Yujing
  • Re: [Freesurfer] Problem running recon-all Gregory Book
  • Re: [Freesurfer] Problem running recon-all Gregory Book
  • Re: [Freesurfer] Problem running recon-all fsbuild
  • Re: [Freesurfer] Problem running recon-all Gregory Book
  • Re: [Freesurfer] Problem running recon-all fsbuild
• [Freesurfer] FW: Infant Freesufer auto-recon failure Lemley, Rachel
  • [Freesurfer] FW: Infant Freesufer auto-recon failure Lemley, Rachel
  • Re: [Freesurfer] Infant Freesufer auto-recon failure Zollei, Lilla,Ph.D.
• [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Dan Levitas
  • Re: [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Reuter, Martin,Ph.D.
  • [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Dan Levitas
  • [Freesurfer] Lingering questions for Longitudinal spatiotemporal LME analysis Dan Levitas
• [Freesurfer] Figures for publication Asuka Toyofuku
  • Re: [Freesurfer] Figures for publication Douglas N. Greve
• [Freesurfer] Retinotopy error computing contrast matrices Mesquita, Tiago
  • Re: [Freesurfer] Retinotopy error computing contrast matrices Mesquita, Tiago
• [Freesurfer] Understanding registration with mri_synthmorph Antoine Royer
  • Re: [Freesurfer] Understanding registration with mri_synthmorph Hoffmann, Malte,PhD
  • Re: [Freesurfer] Understanding registration with mri_synthmorph Antoine Royer
  • Re: [Freesurfer] Understanding registration with mri_synthmorph Antoine Royer
  • Re: [Freesurfer] Understanding registration with mri_synthmorph Hoffmann, Malte,PhD
  • Re: [Freesurfer] Understanding registration with mri_synthmorph r04458005
  • Re: [Freesurfer] Understanding registration with mri_synthmorph Antoine Royer
• [Freesurfer] Postdoc position: MRI of brain networks in developmental neuropsychiatry kathrine
• [Freesurfer] 250 Voxels Won't Stay Erased from wm.mgz Upon Relaunch Smith, Thomas
• Re: [Freesurfer] recon-all process still not finishing properly Douglas N. Greve
  • Re: [Freesurfer] recon-all process still not finishing properly Dong, Yilei
  • Re: [Freesurfer] recon-all process still not finishing properly Dong, Yilei
  • Re: [Freesurfer] recon-all process still not finishing properly Douglas N. Greve
• [Freesurfer] GLM Using 2 Surfaces - Thickness and Area Tejaswi D. Sudhakar
  • Re: [Freesurfer] GLM Using 2 Surfaces - Thickness and Area Douglas N. Greve
• [Freesurfer] Default intensity values for gray and white matter Lokhandwala, Sanna
  • Re: [Freesurfer] Default intensity values for gray and white matter Fischl, Bruce R.,PHD
• [Freesurfer] gunzip error in load_mgh.m when file path contains spaces Tyler Slouf
  • Re: [Freesurfer] gunzip error in load_mgh.m when file path contains spaces Douglas N. Greve

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