Can you take a look at your images and the aseg.presurf.mgz segmentation
and the rh.orig.nofix? The program that is throwing an error is trying
to determine where the non-cortical medial wall is based on the aseg and
the orig.nofix. If one or both of those are bad, then it may fail.
On 11/11/2024 8:47 AM, 王又劼 wrote:
External Email - Use Caution
Hello FreeSurfer Developers, Thank you to the development team for
integrating deep learning-based image processing pipelines! I
encountered the following error while running the |recon-all -all|command in FreeSurfer 8.0.0-beta: mri_label2label --label-cortex
/usr/local/freesurfer/8.0.0-beta/subjects/sub-JS_test/surf/rh.orig.nofix
/usr/local/freesurfer/8.0.0-beta/subjects/sub-JS_test/mri/aseg.presurf.mgz
0
/usr/local/freesurfer/8.0.0-beta/subjects/sub-JS_test/label/rh.nofix.cortex.label
double free or corruption (out) Abort (core dumped) ERROR: Command
exited with non-zero status 1
This subject was successfully processed with FreeSurfer 7. I would
like to know if this issue is related to insufficient memory or if it
could be due to other reasons. Thank you again for your dedication and
efforts. (base) root@LXG:~# free total used free shared buff/cache
available Mem: 32671564 688124 31172704 4728 810736 31547224 Swap:
8388608 118036 8270572 Best regards, Youjie Wang
1) FreeSurfer version: freesurfer_ubuntu22-8.0.0-beta_amd64.deb 2)
Platform: Windows WSL2 3) uname -a: Linux LXG
5.15.153.1-microsoft-standard-WSL2 #1 SMP Fri Mar 29 23:14:13 UTC 2024
x86_64 x86_64 x86_64 GNU/Linux 4) recon-all.log: see attached
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