I think this is the bug where you need to set the environment variable
FS_ALLOW_DEEP to 1, eg,
export FS_ALLOW_DEEP=1
or
setenv FS_ALLOW_DEEP 1
Try that and then rerun
On 12/11/2024 12:14 PM, Huang, Yujing wrote:
Can you add those options as shown in the output ‘-fix-ento-wm
-transfer-base-bfs -fix-vsinus -fix-mca-dura -fix-ga -fix-acj
-synthstrip -synthseg -synthmorph’?
*From:*freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *???
*Sent:* Wednesday, December 11, 2024 11:53 AM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* [Freesurfer] Freesurfer v8.0.0 error
* External Email - Use Caution *
Hello FreeSurfer Developers,
I installed freesurfer 8.0.0 successfully but failed to run "recon-all
-i *** -s *** -all -localGI -qcache" for any subjects. I tried this
version 8.0.0beta on both macos latest version and ubuntu 22.04, the
error was the same as follows:
"Adding options -fix-ento-wm -transfer-base-bfs -fix-vsinus
-fix-mca-dura -fix-ga -fix-acj -synthstrip -synthseg -synthmorph"
"ERROR: cannot use ML routines"
The command line did not even start anything, thus no log file was
generated.
I've searched the list and no similar errors have been reported. Does
anyone have any thoughts on how to trouble-shoot this one?
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