Can you send the log file and the gtm.stats file? The command you have
should rescale based upon the intensity in cerebellum gm and wm. Have
you looked at your FDG volume to make sure it looks ok in cblum?
On 11/26/2024 10:15 PM, Lai, Ian M. wrote:
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I am quite inexperienced with the technology but have been asked to
use PETSurfer to create a 'SUVR Image' of an FDG Pet scan, where the
number associated with intensity in the motion-corrected, partial
volume corrected value is the SUVR value.
>From what I understand, an indication of success would be that the
values on the mgx.gm.nii.gz being on the scale of around 1-10, rather
than in the thousands. I have tried to achieve this by adding the
--rescale 7 8 46 47 flag to the partial volume correction step, but
the numbers are still in the order of the thousands. Is there any way
to manually rescale the file's intensities, dividing the entire file's
intensities by the average value across the cerebellum?
Thank you for your help, please let me know if my question is unclear.
Ian
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