External Email - Use Caution Dear Freesurfer developers, I have no previous experience in Freesufer and I am trying to go through the tutorial before analyzing my own data. I’m working on the dataset you shared on your website. I work on MacBook Pro Apple M2 Pro 32 GB Sonoma 14.2.1. My Freesurfer version is 8.0.0 beta. I set environmental variable FS_ALLOW_DEEP to 1 as suggested. The dataset was one from the tutorial. The directory name was practice_with_data/dicoms I ran recon-all command:
recon-all -all -i I49 -s Subj001
Freesurfer had worked for a time but eventually it came up with a message:
(0) INVALID_ARGUMENT: input must be 4-dimensional[1,72,72,72,24]
[[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]]
[[unet/unet_bn_down_0/FusedBatchNormV3/_16]]
(1) INVALID_ARGUMENT: input must be 4-dimensional[1,72,72,72,24]
[[{{node unet/unet_bn_down_0/FusedBatchNormV3}}]]
0 successful operations.
0 derived errors ignored. [Op:__inference_predict_function_1146]
ERROR:
Darwin 192.168.1.14 23.2.0 Darwin Kernel Version 23.2.0: Wed Nov 15 21:55:06
PST 2023; root:xnu-10002.61.3~2/RELEASE_ARM64_T6020 arm64
recon-all -s Subj001 exited with ERRORS at Mon Nov 18 21:41:39 CET 2024
label, surf, tmp, touch and trash in Subj001 are empty.
I checked the mailing list but I couldn’t find any hint..
Please find attached recon-all.log file.
I would be very grateful for your help!
Marcin Stański
Poznań University of Medical Science
Department of General Radiology and Neuroradiology
Poznań, Poland
recon-all.log
Description: recon-all.log
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