External Email - Use Caution Dear Douglas Thank you for the kind response I was wondering if Eugenio had the chance to look at this issue thank you Simone Cauzzo
On Tue, Nov 12, 2024 at 12:58 PM Simone Cauzzo <cauzzo.sim...@gmail.com> wrote: > Hi all > I am running Freesurfer 7.4 > I use recon-all with the -FLAIRpial option. > > 1) I wonder whether the FLAIR to T1 registration is handled by recon-all > or whether I need to supply a FLAIR image already registered to T1. > > 2) in case recon-all handles the registration, is there a way I can check > the registration quality? which file should I use in freeview? > > 3) in case I already have a reliable FLAIR to T1 registration, is there a > way to make recon-all skip the FLAIR to T1 registration? > > In addition, I would like to use segmentHA_T2.sh > > 4) in case recon-all handles the registration, which file can I give to > segmentHA_T2 as additional scan? I guess I should select the FLAIR already > registered to T1.. > > 5) Is there a reason why I should prefer a T2 image to a FLAIR for > segmentHA_T2? > > Thank you > > Simone Cauzzo, PhD > University of Padova >
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