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• • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Andrew McDavid
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Kasper Daniel Hansen
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Andrew McDavid
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Andrew McDavid
• [Bioc-devel] New version of rmspc - error Meriem Bahda
  • Re: [Bioc-devel] New version of rmspc - error Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] New version of rmspc - error Meriem Bahda
  • Re: [Bioc-devel] New version of rmspc - error Martin Grigorov
  • Re: [Bioc-devel] New version of rmspc - error Meriem Bahda
  • Re: [Bioc-devel] New version of rmspc - error Andres Wokaty
  • Re: [Bioc-devel] New version of rmspc - error Meriem Bahda
  • Re: [Bioc-devel] New version of rmspc - error Meriem Bahda
• Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Marcel Ramos Pérez
  • Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Lluís Revilla
  • Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Marcel Ramos
  • Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Lluís Revilla
  • Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Martha M
• [Bioc-devel] Bioconductor 3.21 db0s, OrgDbs, and TxDbs now available Kern, Lori via Bioc-devel
• [Bioc-devel] PRONE Release Branch RELEASE_3_20 Not Updating Lisi Arend
  • Re: [Bioc-devel] PRONE Release Branch RELEASE_3_20 Not Updating Kern, Lori via Bioc-devel
• [Bioc-devel] GBCC2025: Expression of Interest for Training Topics Maria . Doyle
• [Bioc-devel] Bioconductor 3.21 Release Schedule Kern, Lori via Bioc-devel
• [Bioc-devel] S4Vectors installation error: no setequal S4 generic Laurent Gatto via Bioc-devel
• [Bioc-devel] Deprecating benchmarkfdrData2019 ExperimentHub package Stephanie Hicks via Bioc-devel
• [Bioc-devel] Error during download data by GDCquery_clinic Jarosław Sikora via Bioc-devel
  • Re: [Bioc-devel] Error during download data by GDCquery_clinic Kern, Lori via Bioc-devel
• [Bioc-devel] Rust compilation environment in Bioconductor Sun Wenjie
  • Re: [Bioc-devel] Rust compilation environment in Bioconductor Andres Wokaty
• [Bioc-devel] Issue with devel package Shreyan Gupta via Bioc-devel
  • Re: [Bioc-devel] Issue with devel package Kern, Lori via Bioc-devel
• [Bioc-devel] How to provide hotfix for current release Alexander Blume
  • Re: [Bioc-devel] How to provide hotfix for current release James W. MacDonald
  • Re: [Bioc-devel] How to provide hotfix for current release Alexander Blume
  • Re: [Bioc-devel] How to provide hotfix for current release Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] How to provide hotfix for current release Alexander Blume
• [Bioc-devel] useR! 2025 at Duke University in Durham, NC (August 8-10, 2025) Maria . Doyle
• [Bioc-devel] crupR submission re-activation (again) Persia Akbari Omgba
  • Re: [Bioc-devel] crupR submission re-activation (again) Kern, Lori via Bioc-devel
• [Bioc-devel] build/check problems with 'hyperdraw' Paul Murrell
  • Re: [Bioc-devel] build/check problems with 'hyperdraw' Robert M. Flight
  • Re: [Bioc-devel] build/check problems with 'hyperdraw' Paul Murrell
• [Bioc-devel] FW: [US-RSE Association] USRSE'25 Call for Submissions Sean Davis
• [Bioc-devel] EuroBioC2025: Abstract Submissions Open! Maria . Doyle
• Re: [Bioc-devel] Bioconductor checking error: example failed due to a suggest package of a dependecy package of my package Kern, Lori via Bioc-devel
• [Bioc-devel] Add maintainer to package TreeAndLeaf Milena Andreuzo
  • Re: [Bioc-devel] Add maintainer to package TreeAndLeaf Kern, Lori via Bioc-devel
• [Bioc-devel] Job: Research Software Engineer - Bioconductor tools for biological data science and AI Wolfgang Huber
• [Bioc-devel] Excluding internal functions from package manual Burak Ogan Mancarci
  • Re: [Bioc-devel] Excluding internal functions from package manual Hervé Pagès
• [Bioc-devel] Add a maintainer for MuData Danila Bredikhin
  • Re: [Bioc-devel] Add a maintainer for MuData Kern, Lori via Bioc-devel
• [Bioc-devel] Galaxy Bioconductor Community Conference (GBCC2025) Registration Open! Maria . Doyle
• [Bioc-devel] experimenthub package timeout and resubmission Kevin Stachelek
  • Re: [Bioc-devel] experimenthub package timeout and resubmission Kern, Lori via Bioc-devel
• Re: [Bioc-devel] Additional maintainer for package AssessORFData Kern, Lori via Bioc-devel
• [Bioc-devel] Announcing the EuroBioC2025 Sticker Design Contest! Maria . Doyle
• [Bioc-devel] ExperimentHub ft resource with password Laurent Gatto via Bioc-devel
  • Re: [Bioc-devel] ExperimentHub ft resource with password Robert Castelo via Bioc-devel
  • Re: [Bioc-devel] ExperimentHub ft resource with password Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] ExperimentHub ft resource with password Mike Smith
  • Re: [Bioc-devel] ExperimentHub ft resource with password Sean Davis
• [Bioc-devel] spoon problems reported Multiple platform build/check BioC 3.21 Kinnary Shah
  • Re: [Bioc-devel] spoon problems reported Multiple platform build/check BioC 3.21 Kern, Lori via Bioc-devel
• [Bioc-devel] Announcing the GBCC2025 Logo Design Winner! Maria . Doyle
• [Bioc-devel] Bioconductor Course, Kenya 2025: Applications Open! Maria . Doyle
• [Bioc-devel] Segfault in viewMeans from IRanges on R-devel with Bioc-devel hdash.w...@gmail.com
  • Re: [Bioc-devel] Segfault in viewMeans from IRanges on R-devel with Bioc-devel Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Segfault in viewMeans from IRanges on R-devel with Bioc-devel hdash.w...@gmail.com
• Re: [Bioc-devel] groHMM Bioconductor Pariksheet Nanda via Bioc-devel
  • Re: [Bioc-devel] groHMM Bioconductor Tulip Nandu
• [Bioc-devel] Deprecation request for CBEA Quang Nguyen
  • Re: [Bioc-devel] Deprecation request for CBEA Kern, Lori via Bioc-devel
• [Bioc-devel] Cleaned large datafiles in "batchCorr" package under review Anton Ribbenstedt
  • Re: [Bioc-devel] Cleaned large datafiles in "batchCorr" package under review Kern, Lori via Bioc-devel
• [Bioc-devel] Code of Conduct committee announcement Kevin RUE
• [Bioc-devel] Issue Installing hugene10stv1cdf on R 4.4.2 Sadaf Pouladi
  • Re: [Bioc-devel] Issue Installing hugene10stv1cdf on R 4.4.2 Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Issue Installing hugene10stv1cdf on R 4.4.2 Vincent Carey
• [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Axel Klenk
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Helena L. Crowell
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Axel Klenk
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Helena L. Crowell
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Hervé Pagès
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Kasper Daniel Hansen
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Axel Klenk
  • Re: [Bioc-devel] Problem with S4 method dispatch: .. bug in methods package ? SummarizedExperiment, but not SingleCellExperiment Martin Maechler
  • Re: [Bioc-devel] Problem with S4 method dispatch: .. bug in methods package ? SummarizedExperiment, but not SingleCellExperiment Axel Klenk
  • Re: [Bioc-devel] Problem with S4 method dispatch: .. bug in methods package ? SummarizedExperiment, but not SingleCellExperiment Martin Maechler
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Kasper Daniel Hansen
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Andrea Komljenović
• [Bioc-devel] Adding additional validity checks when calling setter methods of inherited S4Vectors::DataFrame class Nanda, Pariksheet via Bioc-devel
  • Re: [Bioc-devel] Adding additional validity checks when calling setter methods of inherited S4Vectors::DataFrame class Lluís Revilla
  • Re: [Bioc-devel] Adding additional validity checks when calling setter methods of inherited S4Vectors::DataFrame class Pariksheet Nanda via Bioc-devel
• [Bioc-devel] Fix dependency issues in devel and release Aurora Maurizio
  • Re: [Bioc-devel] Fix dependency issues in devel and release Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Fix dependency issues in devel and release Marcel Ramos
• [Bioc-devel] Question regarding new ssh key Jessie Maier via Bioc-devel
  • Re: [Bioc-devel] Question regarding new ssh key Kern, Lori via Bioc-devel
• [Bioc-devel] Inquiry Regarding Landing Page Ali Mostafa
  • Re: [Bioc-devel] Inquiry Regarding Landing Page Jacques Serizay
  • Re: [Bioc-devel] Inquiry Regarding Landing Page Ali Mostafa
  • Re: [Bioc-devel] Inquiry Regarding Landing Page Kern, Lori via Bioc-devel
• [Bioc-devel] betaHMM problems reported in the Multiple platform build/check report for BioC 3.21 Koyel Majumdar
  • Re: [Bioc-devel] betaHMM problems reported in the Multiple platform build/check report for BioC 3.21 Kern, Lori via Bioc-devel
• [Bioc-devel] rmspc problems reported in the Multiple platform build/check report for BioC 3.20 Meriem Bahda
  • Re: [Bioc-devel] rmspc problems reported in the Multiple platform build/check report for BioC 3.20 Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] rmspc problems reported in the Multiple platform build/check report for BioC 3.20 Jennifer Wokaty
  • Re: [Bioc-devel] rmspc problems reported in the Multiple platform build/check report for BioC 3.20 Meriem Bahda
  • Re: [Bioc-devel] rmspc problems reported in the Multiple platform build/check report for BioC 3.20 Jennifer Wokaty
  • Re: [Bioc-devel] rmspc problems reported in the Multiple platform build/check report for BioC 3.20 Meriem Bahda
  • [Bioc-devel] Fwd: rmspc problems reported in the Multiple platform build/check report for BioC 3.20 Meriem Bahda
  • Re: [Bioc-devel] rmspc problems reported in the Multiple platform build/check report for BioC 3.20 Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] rmspc problems reported in the Multiple platform build/check report for BioC 3.20 Meriem Bahda
• [Bioc-devel] Not able to make changes to repository push to g...@git.bioconductor.org My Nguyen via Bioc-devel
  • Re: [Bioc-devel] Not able to make changes to repository push to g...@git.bioconductor.org Kern, Lori via Bioc-devel
• [Bioc-devel] Which remote branch to push changes to Richard Heery
  • Re: [Bioc-devel] Which remote branch to push changes to Kern, Lori via Bioc-devel
• [Bioc-devel] Package check errors Fwd: seqArchR problems reported in the Multiple platform build/check report for BioC 3.21 Sarvesh Nikumbh
  • Re: [Bioc-devel] Package check errors Fwd: seqArchR problems reported in the Multiple platform build/check report for BioC 3.21 Martin Grigorov
  • Re: [Bioc-devel] Package check errors Fwd: seqArchR problems reported in the Multiple platform build/check report for BioC 3.21 Jennifer Wokaty
  • Re: [Bioc-devel] Package check errors Fwd: seqArchR problems reported in the Multiple platform build/check report for BioC 3.21 Martin Grigorov
  • Re: [Bioc-devel] Package check errors Fwd: seqArchR problems reported in the Multiple platform build/check report for BioC 3.21 Martin Grigorov
• [Bioc-devel] FW: [EXTERNAL] SRAdb problems reported in the Multiple platform build/check report for BioC 3.21 Zhu, Jack (NIH/NCI) [E] via Bioc-devel
  • Re: [Bioc-devel] [EXTERNAL] SRAdb problems reported in the Multiple platform build/check report for BioC 3.21 Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] [EXTERNAL] SRAdb problems reported in the Multiple platform build/check report for BioC 3.21 Zhu, Jack (NIH/NCI) [E] via Bioc-devel
  • Re: [Bioc-devel] [EXTERNAL] SRAdb problems reported in the Multiple platform build/check report for BioC 3.21 James W. MacDonald
  • Re: [Bioc-devel] [EXTERNAL] SRAdb problems reported in the Multiple platform build/check report for BioC 3.21 Sean Davis
  • Re: [Bioc-devel] [EXTERNAL] SRAdb problems reported in the Multiple platform build/check report for BioC 3.21 Zhu, Jack (NIH/NCI) [E] via Bioc-devel
• [Bioc-devel] Testing the srnadiff package with R CMD check takes lots of time Matthias Zytnicki
  • Re: [Bioc-devel] Testing the srnadiff package with R CMD check takes lots of time Vincent Carey
  • Re: [Bioc-devel] Testing the srnadiff package with R CMD check takes lots of time Matthias Zytnicki
• [Bioc-devel] Okay to push a hotfix for an existing release? Nanda, Pariksheet via Bioc-devel
  • Re: [Bioc-devel] Okay to push a hotfix for an existing release? Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Okay to push a hotfix for an existing release? Marcel Ramos
  • Re: [Bioc-devel] Okay to push a hotfix for an existing release? Nanda, Pariksheet via Bioc-devel
• [Bioc-devel] change of maintainer Michael Shapiro
  • Re: [Bioc-devel] change of maintainer Kern, Lori via Bioc-devel
• [Bioc-devel] Request to Add an Additional Developer to CRISPRseek on Bioconductor Zhu, Lihua (Julie) via Bioc-devel
  • Re: [Bioc-devel] Request to Add an Additional Developer to CRISPRseek on Bioconductor Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Request to Add an Additional Developer to CRISPRseek on Bioconductor Zhu, Lihua (Julie) via Bioc-devel
  • Re: [Bioc-devel] Request to Add an Additional Developer to CRISPRseek on Bioconductor Hu, Kai via Bioc-devel
• [Bioc-devel] Build error: missing downloadthis dependency Hiranyamaya Dash
  • Re: [Bioc-devel] Build error: missing downloadthis dependency Kern, Lori via Bioc-devel
• [Bioc-devel] Unable to push changes to g...@git.bioconductor.org:packages Brendan Miller
  • Re: [Bioc-devel] Unable to push changes to g...@git.bioconductor.org:packages Kern, Lori via Bioc-devel
• [Bioc-devel] New BioC 3.21 settings for R 4.5.0 Jennifer Wokaty
  • Re: [Bioc-devel] New BioC 3.21 settings for R 4.5.0 Kristian Ullrich
  • Re: [Bioc-devel] New BioC 3.21 settings for R 4.5.0 Hervé Pagès
  • Re: [Bioc-devel] New BioC 3.21 settings for R 4.5.0 Kristian Ullrich
  • Re: [Bioc-devel] New BioC 3.21 settings for R 4.5.0 Lluís Revilla
  • Re: [Bioc-devel] New BioC 3.21 settings for R 4.5.0 Kristian Ullrich
  • Re: [Bioc-devel] New BioC 3.21 settings for R 4.5.0 Kasper Daniel Hansen
• [Bioc-devel] Cannot trace "Warning" Matthias Zytnicki
  • Re: [Bioc-devel] Cannot trace "Warning" Kern, Lori via Bioc-devel
• [Bioc-devel] biocLite.R was removed in October 2024 Neumann, Steffen
• [Bioc-devel] Is it possible to reopen a closed issue on to push reviewed code for the next release ? Jean-Philippe Villemin
  • Re: [Bioc-devel] Is it possible to reopen a closed issue on to push reviewed code for the next release ? Kern, Lori via Bioc-devel
• [Bioc-devel] SurfR Enrichment_barplot git<->builder sync issues Aurora Maurizio
  • Re: [Bioc-devel] SurfR Enrichment_barplot git<->builder sync issues Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] SurfR Enrichment_barplot git<->builder sync issues Aurora Maurizio
  • Re: [Bioc-devel] SurfR Enrichment_barplot git<->builder sync issues Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] SurfR Enrichment_barplot git<->builder sync issues Aurora Maurizio
• [Bioc-devel] Bioconductor 3.20 is Released! Kern, Lori via Bioc-devel
• [Bioc-devel] RELEASE_3_20 branch is now available and push access is re-enabled Kern, Lori via Bioc-devel
• Re: [Bioc-devel] Last day to make commits before Bioconductor RELEASE 3.20 Samuel Granjeaud IR/Inserm
  • Re: [Bioc-devel] Last day to make commits before Bioconductor RELEASE 3.20 Kern, Lori via Bioc-devel
• [Bioc-devel] All commits to Bioconductor stopped from 7:00 am ET for release Kern, Lori via Bioc-devel
• [Bioc-devel] Issue with keras/tensorflow Nick Borcherding
  • Re: [Bioc-devel] Issue with keras/tensorflow Jennifer Wokaty
• [Bioc-devel] Policies regarding forked packages Ali Sajid Imami
  • Re: [Bioc-devel] Policies regarding forked packages Leonardo Collado Torres
  • Re: [Bioc-devel] Policies regarding forked packages Alexey Sergushichev
  • Re: [Bioc-devel] Policies regarding forked packages Henrik Bengtsson
  • Re: [Bioc-devel] Policies regarding forked packages Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Policies regarding forked packages Lluís Revilla
• [Bioc-devel] Last day to make commits before Bioconductor RELEASE 3.20 Kern, Lori via Bioc-devel
• [Bioc-devel] Announcing the GBCC2025 Logo Design Contest! Maria . Doyle
  • Re: [Bioc-devel] Announcing the GBCC2025 Logo Design Contest! Maria . Doyle
  • [Bioc-devel] Final Reminder: GBCC2025 Logo Design Contest Ends Dec 8! Maria . Doyle
• [Bioc-devel] DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64 Nguyen, Trinh (NIH/NCI) [C] via Bioc-devel
  • Re: [Bioc-devel] DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64 Martin Grigorov
  • Re: [Bioc-devel] [EXTERNAL] Re: DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64 Nguyen, Trinh (NIH/NCI) [C] via Bioc-devel
• [Bioc-devel] Important Bioconductor Release 3.20 Kern, Lori via Bioc-devel
• [Bioc-devel] WARNING on builders from rgl package Matteo Tiberti via Bioc-devel
  • Re: [Bioc-devel] WARNING on builders from rgl package Martin Grigorov
  • Re: [Bioc-devel] WARNING on builders from rgl package Matteo Tiberti via Bioc-devel
• [Bioc-devel] Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora KABILAN S
  • Re: [Bioc-devel] Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora James W. MacDonald
• [Bioc-devel] BayesSpace maintainership Matthew Stone
  • Re: [Bioc-devel] BayesSpace maintainership CoreTeam Bioconductor
  • Re: [Bioc-devel] BayesSpace maintainership Edward Zhao
• [Bioc-devel] Error on palomino8 Oleksii Nikolaienko
  • Re: [Bioc-devel] Error on palomino8 Hervé Pagès
• [Bioc-devel] arrow dependent packages fail to build on macOS Edward Zhao
  • Re: [Bioc-devel] arrow dependent packages fail to build on macOS Hervé Pagès
  • Re: [Bioc-devel] arrow dependent packages fail to build on macOS Edward Zhao
• [Bioc-devel] Kunpeng2 compilation error -lopenblas Morgan, Michael via Bioc-devel
  • Re: [Bioc-devel] Kunpeng2 compilation error -lopenblas Martin Grigorov
  • Re: [Bioc-devel] Kunpeng2 compilation error -lopenblas Morgan, Michael via Bioc-devel
• [Bioc-devel] ANCOMBC Package Error on Kunpeng2 Platform Huang Lin (Frederick)

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