As I already noted on the support site, you need to use makeOrgPackage, which has a help page, and a vignette https://bioconductor.org/packages/release/bioc/vignettes/AnnotationForge/inst/doc/MakingNewOrganismPackages.html
-----Original Message----- From: Bioc-devel <bioc-devel-boun...@r-project.org> On Behalf Of KABILAN S Sent: Wednesday, October 23, 2024 7:27 AM To: bioc-devel@r-project.org Subject: [Bioc-devel] Guidance on Creating an Annotation Package for Heterorhabditis bacteriophora !-------------------------------------------------------------------| This Message Is From an Untrusted Sender You have not previously corresponded with this sender. See https://itconnect.uw.edu/email-tags for additional information. Please contact the UW-IT Service Center, h...@uw.edu 206.221.5000, for assistance. |-------------------------------------------------------------------! Dear Bioconductor Team, I have the annotation data for the organism Heterorhabditis bacteriophora in an Excel format, and I would like to publish it as an annotation package. Previously, I attempted to use the AnnotationForge package to create an annotation package for this organism based on NCBI resources, but I was unable to retrieve all the necessary gene information. I am seeking advice on how I can convert my Excel file into a Bioconductor-compliant annotation package. The goal is to utilize it for pathway enrichment analysis, Gene Ontology (GO) enrichment analysis, and other downstream analyses using tools like clusterProfiler and other relevant R packages. Could you please guide me on the appropriate steps or best practices to follow for publishing this annotation file as an R package? Thank you for your assistance. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!K-Hz7m0Vt54!hKA-CYp5RMX1KxqGshwTg0BQVvzOjJGD3yv3zUqsPmYfn8oSy9nMg3Mswm_l3mfLtahigpWM1lnkp5dzS4LU9w$ _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
