Hi Aurora, It looks like you were able to sync your package updates to Bioconductor. I think the question is more about when will those changes be reflected in the landing page.
Please note that Bioconductor 3.20 builds every Monday and Thursday [1]. Your fixes should be reflected on today's report (~3 PM EST). Best regards, Marcel PS. You can checked for sync'ed changes at https://code.bioconductor.org/browse/SurfR/. [1]: https://bioconductor.org/checkResults/ On 12/30/24 10:03 AM, Kern, Lori via Bioc-devel wrote: > * This email originates from a sender outside of CUNY. Verify the sender > before replying or clicking on links and attachments. * > > You should update the package yourself by pushing to the RELEASE_3_20 and > devel branches on git.bioconductor.org > > > > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ________________________________ > From: Bioc-devel<bioc-devel-boun...@r-project.org> on behalf of Aurora > Maurizio<auroramauriz...@gmail.com> > Sent: Monday, December 30, 2024 4:14 AM > To:bioc-devel@r-project.org <bioc-devel@r-project.org> > Subject: [Bioc-devel] Fix dependency issues in devel and release > > Dear Bioconductor Team, > > A package that SurfR depended on was recently removed from CRAN. I noticed > that the authors have been active on its GitHub repo lately, so I am > hopeful that it will become available again soon. > > In the meantime, I have addressed the issue by rewriting the affected > SurfR-related functions and removing that package from SurfR's > dependencies. Currently, I recommend users who encounter installation > issues due to this dependency to install the development version of SurfR > directly from my GitHub repository. > > Would it be possible for you to sync the released version of SurfR on > Bioconductor to reflect these changes? This would ensure that users can > continue to install and use SurfR without encountering dependency issues. > > Thank you for your time and assistance. Please let me know if there are any > additional steps I need to take to facilitate this process. > > Best wishes, > Aurora > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://urldefense.com/v3/__https://secure-web.cisco.com/1Jcj9o-M2-3O6sVZuEsDp9xfhStii6LB4vrz2B1dVlhOzg6kkWeusU9gvWnrHZZoNbngi0qHcLEE8toJ8ZJEuovTcwh-OPGy9r4yqGAO8_ST5ZOZ5F1Y_Z7KVwmUh09Imh-qs53Lw4sYWdNjhiNFWb7GA9NBetBA-kLu0suggXLNRJqcKOZDaQPER9IaUM9HjdHLy_7nl19Clth6EVRm8Fv7AIQvKVxsXh6XJZJansDZ_fMDdPIj3DgUrH_EB-SbO_MjxaK9nN3yU3_mz7XGXwAV4ed0Np7IPRZZNtSidCGng1ZDc5V1OHMOMNXB0d3rV/https*3A*2F*2Fstat.ethz.ch*2Fmailman*2Flistinfo*2Fbioc-devel__;JSUlJSUl!!LRXxDv2l!WNSkzT46H5_u0xvGUQjr-PyZWdSinodtB2tjpjQA6Vc5RJb5xUOEv3bcwNoK3AFSD5Lam2PqfVt_g4zlKXWbX_BTo0P3NA$ > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/bioc-devel__;!!LRXxDv2l!WNSkzT46H5_u0xvGUQjr-PyZWdSinodtB2tjpjQA6Vc5RJb5xUOEv3bcwNoK3AFSD5Lam2PqfVt_g4zlKXWbX_AZhJjcvw$ ____ *Marcel Ramos, MPH* Sr. Data Scientist CUNY Graduate School of Public Health & Health Policy 55 W. 125th Street, 6th Fl.| New York, NY 10027 marcel.ra...@sph.cuny.edu <mailto:marcel.ra...@sph.cuny.edu> | (646) 364-9585 sph.cuny.edu <https://sph.cuny.edu> [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
