Thank you Lori, I see. All the functions in git.bioconductor.org:packages/SurfR.git look fine and updated to me. In the last month (before and after Bioc 3.20 release) looking at the builder's reports it seemed that the package version associated with the last bump was always consistent with my last edit, yet the tested functions reported in the builder's report were not updated (e.g. Enrichment_barplot in nebbiolo2*)*. I'll read carefully the manual and try to figure it out.
Here my last commands: # origin g...@github.com:auroramaurizio/SurfR.git (fetch) # origin g...@github.com:auroramaurizio/SurfR.git (push) # upstream g...@git.bioconductor.org:packages/SurfR.git (fetch) # upstream g...@git.bioconductor.org:packages/SurfR.git (push) git fetch --all git merge origin/devel git merge upstream/devel git add vignettes/Intro_to_SurfR.Rmd git add R/Enrichment_barplot.R git add DESCRIPTION git commit -m "bumped the package version v1.2.0" git push origin devel git push upstream devel git checkout RELEASE_3_20 git merge upstream/RELEASE_3_20 git merge origin/RELEASE_3_20 git push upstream RELEASE_3_20 git push origin RELEASE_3_20 Best, Aurora Il giorno gio 7 nov 2024 alle ore 14:28 Kern, Lori < lori.sheph...@roswellpark.org> ha scritto: > We do not sync github repositories automatically. > > You will need to push your changes to git.bioconductor.org. The > repository on our git server is the only version Bioconductor > knows/propagates. A new version will not propagate without a valid version > bump as well. > > Please see > https://contributions.bioconductor.org/git-version-control.html > > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Aurora > Maurizio <auroramauriz...@gmail.com> > *Sent:* Friday, November 1, 2024 7:05 AM > *To:* bioc-devel@r-project.org <bioc-devel@r-project.org>; > jennifer.wok...@sph.cuny.edu <jennifer.wok...@sph.cuny.edu> > *Subject:* [Bioc-devel] SurfR Enrichment_barplot git<->builder sync issues > > Dear all, > > I've noticed a discrepancy between the SurfR package functions on GitHub > (both the devel and RELEASE_3_20 branches) and those checked on the > builder. > > Specifically, the Enrichment_barplot function, which is causing errors on > several builders, has been updated recently. I rewrote the Example of this > function a few weeks ago (including also commenting it). Still, the updated > function on GitHub (linked here: GitHub RELEASE_3_20 > < > https://secure-web.cisco.com/1cDlDmIhDitmf7EgCo7pvDt_4Xa0FvvcCrE3IOguFGVI54jktX5xJLx8oQYcNwbZevh91io-9EzRAFyOlBo5c9Xcmyvn32KWyn9uXzOHFaQrXJcAJBilGoT4wTuRBqRUZ2aQg8QXbhluxJ7WNGUYi4-2fXJmyPM_OKIVKd2sbZasLdqY3AH8XmDftXYKPYwVE-vhpzVePNgqpHwTUKL212TkaqWoAb3ejGzcaxZUZBY5pSXTID3e6yHdfO4Y_dPKP57V-8zF4FiKppzTOoZ_BjQiRYFLO8cq8TqAj0woW5xBEuNfK7-LUnKfiKxL5daSJSrS6scuHRCcakZovK5hRKA/https%3A%2F%2Fgithub.com%2Fauroramaurizio%2FSurfR%2Fblob%2FRELEASE_3_20%2FR%2FEnrichment_barplot.R > >) > is quite different from the old version that is causing errors in the build > checks (see builder error > < > https://secure-web.cisco.com/1Ux_1GklNVCJzRM3BolzqjOFWciPZdo85Jr-yN58RY8kdUVyqdLPms7K1Rltm2awA___e7ymqw2T5t8Gp7qEzyXMu1d8yw23Y0n0Hc8PmVWwrSApIvM_ANaIRtYMheBae8O2vTx0MDklofe0WwgJxM0dQe-6_wzq7Y9y_xqXx7X4_Ig4BSXaQ9-0Y3cxAkNElxdtApxr4tKWwLb2XSjZ-dKj2zTNnL7FU8ByEyuvHorxWV5vxw-EuVZiD8uAsp49bb0PrMl2uy9V4yMn5dATDxXakMG_YMLCZ_qMWAopCs0CrYO_1FEL9-6n7dBZLcSRd/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.20%2Fbioc-LATEST%2FSurfR%2Fteran2-checksrc.html > > > ). > > Could you please assist me in resolving this synchronization issue? > > Thank you very much for your help. > > Best regards, > Aurora > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1v2m-LAemqN38vBF8lhNIKOUWbAoe7YpYQUDuOU8R8ThgtRj0E62XjJ2__7v9kv3iTqI6cHnaVDc8AZjIizEkT_7d8AC3_juJUsfLM5wzRtSqAJbQi3dlmgh6EXUH-wU_QAU_MJ6QrmGvoZ4cWrKrGzysQu7tJYRvQf5PjqMI5VGFyC9sKNcc-pBD0CU7fio7TneIulKulEtULqOX_DvtCvXyTxSxZOo9Fe5TYBzyyCD69Z1XUmu_TlMdvwlOIS4SzyR_G0PIxAyEf9VGtj1fIO1XGlpZd7qLaqG8w2bxb5TOY5I4qGXsVOg4rdJ6OWR_/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
