You should update the package yourself by pushing to the RELEASE_3_20 and devel
branches on git.bioconductor.org
Lori Shepherd - Kern
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Aurora
Maurizio <auroramauriz...@gmail.com>
Sent: Monday, December 30, 2024 4:14 AM
To: bioc-devel@r-project.org <bioc-devel@r-project.org>
Subject: [Bioc-devel] Fix dependency issues in devel and release
Dear Bioconductor Team,
A package that SurfR depended on was recently removed from CRAN. I noticed
that the authors have been active on its GitHub repo lately, so I am
hopeful that it will become available again soon.
In the meantime, I have addressed the issue by rewriting the affected
SurfR-related functions and removing that package from SurfR's
dependencies. Currently, I recommend users who encounter installation
issues due to this dependency to install the development version of SurfR
directly from my GitHub repository.
Would it be possible for you to sync the released version of SurfR on
Bioconductor to reflect these changes? This would ensure that users can
continue to install and use SurfR without encountering dependency issues.
Thank you for your time and assistance. Please let me know if there are any
additional steps I need to take to facilitate this process.
Best wishes,
Aurora
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