Dear developers, We have a couple of warnings from the builders from our MoonlightR and Moonlight2R packages, which we haven't had before:
Found the following significant warnings: Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. See '/home/biocbuild/bbs-3.20-bioc/meat/Moonlight2R.Rcheck/00install.out' for details. I've seen this on our local servers and it could be related to either missing OpenGL support and/or the fact that it is running on a headless server (not sure why it pops up on nebbiolo2 and not teran2 though). Since rgl.init is run upon package load, I don’t know if we can do anything at code level. A workaround might be to set the system variable RGL_USE_NULL to TRUE prior to building (as implied in the docs<https://rdrr.io/rforge/rgl/man/rgl.useNULL.html>). Any other suggestion? I’ve also just noticed this other error on top, which seems to be hitting many packages on kungpeng2: ** byte-compile and prepare package for lazy loading Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/biocbuild/R/R-4.4.1/site-library/BiocParallel/libs/BiocParallel.so': /usr/lib64/libstdc++.so.6: version `CXXABI_1.3.15' not found (required by /home/biocbuild/R/R-4.4.1/site-library/BiocParallel/libs/BiocParallel.so) Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Thank your for your help Kind regards, Matteo Tiberti Danish Cancer Institute Strandboulevarden 49 DK-2100 Copenhagen Telephone: +45 35 25 73 07 – a part of the Danish Cancer Society [An image showing the Danish Cancer Society's name and logo called the bow in red font. Displayed in red]<https://www.cancer.dk/?utm_source=email&utm_medium=medarbejderemail&utm_campaign=medarbejderemail&utm_content=cancerdk> www.cancer.dk<https://www.cancer.dk/international/> | Our privacy policy<https://www.cancer.dk/om-os/privatlivspolitik/> _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
