Dear everyone,
I have difficulties trying to decrease the time spent to check my package, srnadiff (for reproducibility, you can get the GitHub repo from https://github.com/mzytnicki/srnadiff, on the devel branch). I tried to reduce the tests to 2 files (for reproducibility: test_annotation.R and test_pvalues.R). When I use devtools::check(), the "checking tests" step takes 29 minutes. With all the files, it takes more than one hour. Same goes with R CMD check on the built package. On the BioC check platform, it reaches the time limit. When I use devtools::test(), the same tests takes 8 seconds. Now, on the computer of my colleague, trying to reproduce the BioC environment variables, the whole devtools::check takes a few minutes. I am puzzled by the discrepancy, and would like to reduce this time. Does anyone have a suggestion about how I could proceed? I used profvis with the command p <- profvis::profvis({foo <- devtools::check()}) It seems that most of the time is spent on ".Call" (with no other sub-function called), and I cannot interpret this. I thank you very much for your help. Best regards, Matthias. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
