freesurfer

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2025/03/10 Re: [Freesurfer] Longitudinal samseg not working - TypeError: transform() got an unexpected keyword argument 'affine' Huang, Yujing
2025/03/10 Re: [Freesurfer] Some library issues with segmentAAN Huang, Yujing
2025/03/10 [Freesurfer] Some library issues with segmentAAN Payam Sadeghi Shabestari
2025/03/10 [Freesurfer] Incorrect segmentation and surface offset Tommaso Mariani
2025/03/09 Re: [Freesurfer] Freesurfer 8.0.0 version: gtmseg fsbuild
2025/03/09 Re: [Freesurfer] Problems with Bayesian Segmentation with Histological Atlas "NextBrain" fsbuild
2025/03/09 Re: [Freesurfer] illegal instruction - core dumped with samseg lesion Paola Di Filippo
2025/03/09 [Freesurfer] Problems with Bayesian Segmentation with Histological Atlas "NextBrain" Lukas von Erdmannsdorff
2025/03/09 [Freesurfer] Longitudinal samseg not working - TypeError: transform() got an unexpected keyword argument 'affine' Paola Di Filippo
2025/03/08 [Freesurfer] Freesurfer 8.0.0 version: gtmseg Miguel Ángel Rivas Fernández
2025/03/07 Re: [Freesurfer] illegal instruction - core dumped with samseg lesion fsbuild
2025/03/07 Re: [Freesurfer] letter Shawn Flanagan
2025/03/07 Re: [Freesurfer] Freesurfer 8.0 without processing directives Huang, Yujing
2025/03/07 Re: [Freesurfer] illegal instruction - core dumped with samseg lesion Paola Di Filippo
2025/03/07 Re: [Freesurfer] Hypothalamic subunits segmentation: volumes = 0 Miguel Ángel Rivas Fernández
2025/03/07 Re: [Freesurfer] letter Del Re, Elisabetta
2025/03/07 Re: [Freesurfer] letter Fischl, Bruce R.,PHD
2025/03/07 Re: [Freesurfer] Freesurfer 8.0 without processing directives Ben Wagner
2025/03/07 [Freesurfer] letter Fischl, Bruce R.,PHD
2025/03/07 Re: [Freesurfer] Hypothalamic subunits segmentation: volumes = 0 Iglesias Gonzalez, Juan E.
2025/03/06 [Freesurfer] Hypothalamic subunits segmentation: volumes = 0 Miguel Ángel Rivas Fernández
2025/03/06 Re: [Freesurfer] Freesurfer 8.0 without processing directives Huang, Yujing
2025/03/06 Re: [Freesurfer] illegal instruction - core dumped with samseg lesion fsbuild
2025/03/06 Re: [Freesurfer] Need to re-download for SAMSEG fsbuild
2025/03/06 Re: [Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim Lubig, Andreas
2025/03/06 [Freesurfer] Freesurfer 8.0 without processing directives Ben Wagner
2025/03/05 Re: [Freesurfer] changes in mris_anatomical)stats Adam Martersteck
2025/03/05 [Freesurfer] changes in mris_anatomical)stats Zeng, Victor (BIDMC - Keshavan - Psychiatry)
2025/03/05 [Freesurfer] Need to re-download for SAMSEG Sebastian Adolfo Rios Quintanilla
2025/03/05 Re: [Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim Huang, Yujing
2025/03/05 Re: [Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim Lubig, Andreas
2025/03/05 [Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim Lubig, Andreas
2025/03/05 [Freesurfer] "Re:" text in the Subject: is okay 叶贝宁
2025/03/04 [Freesurfer] [FreeSurfer] Registration of non-mri image to same registered space of mri_image (recon_all) Chavez, Caitlyn
2025/03/04 Re: [Freesurfer] cortical thickness group analysis Huang, Yujing
2025/03/04 [Freesurfer] Using HCP-MMP1 (Glasser) atlas with freesurfer Blum, August
2025/03/03 [Freesurfer] News: subregion probabilistic atlases in MNI space available Iglesias Gonzalez, Juan E.
2025/03/03 [Freesurfer] illegal instruction - core dumped with samseg lesion Paola Di Filippo
2025/03/02 [Freesurfer] cortical thickness group analysis Maria Czarnecka
2025/02/27 Re: [Freesurfer] FS version 8.0.0 released fsbuild
2025/02/27 [Freesurfer] Manual Segmentation Adjustments Asli Eroglu
2025/02/27 [Freesurfer] FS version 8.0.0 released Douglas N. Greve
2025/02/27 Re: [Freesurfer] Unknown error when running longitudinal analysis Huang, Yujing
2025/02/26 Re: [Freesurfer] Issues with FS 7.3 skull stripping but NOT mri_synthstrip Hoffmann, Malte,PhD
2025/02/26 [Freesurfer] dt_recon, CC_Anterior (T1) and FA corregistration. Gonzalo Rojas Costa
2025/02/26 Re: [Freesurfer] Convert 1D mgh back to 3D Huang, Yujing
2025/02/25 [Freesurfer] Recon-all: skip initial inhomogeneity correction Miguel Ángel Rivas Fernández
2025/02/25 [Freesurfer] Convert 1D mgh back to 3D Melissa Thalhammer
2025/02/24 [Freesurfer] dt_recon and corregistration (2)... Gonzalo Rojas Costa
2025/02/24 Re: [Freesurfer] Inquiry Regarding FreeSurfer Usage in Clinical Trials fsbuild
2025/02/24 Re: [Freesurfer] Licensing & permission for publication fsbuild
2025/02/24 [Freesurfer] Licensing & permission for publication Brown, Tanya
2025/02/24 Re: [Freesurfer] Optimizing FreeSurfer for Mouse brain Douglas N. Greve
2025/02/24 Re: [Freesurfer] histo atlas and sTIV Douglas N. Greve
2025/02/24 Re: [Freesurfer] *** buffer overflow detected *** Brunno M. de Campos
2025/02/22 Re: [Freesurfer] *** buffer overflow detected *** fsbuild
2025/02/22 [Freesurfer] Out of Office June Kang
2025/02/22 [Freesurfer] Question regarding high Disk IO during Local Gyrification Index calculations, Ha, Sung Min
2025/02/21 Re: [Freesurfer] Hippocampus and amygdala segmentation Iglesias Gonzalez, Juan E.
2025/02/21 Re: [Freesurfer] *** buffer overflow detected *** Brunno M. de Campos
2025/02/20 [Freesurfer] Hippocampus and amygdala segmentation Miguel Ángel Rivas Fernández
2025/02/20 Re: [Freesurfer] Unable to download version 8.0.0 fsbuild
2025/02/20 Re: [Freesurfer] volumes and surfaces misalignment in freeview Wang, Ruopeng
2025/02/20 [Freesurfer] Unable to download version 8.0.0 Ziming Cui-MSBA23A
2025/02/20 Re: [Freesurfer] *** buffer overflow detected *** Brunno M. de Campos
2025/02/20 Re: [Freesurfer] *** buffer overflow detected *** fsbuild
2025/02/20 [Freesurfer] *** buffer overflow detected *** Brunno M. de Campos
2025/02/20 [Freesurfer] Clarification on co-registration using bbregister Gabriella Monopoli
2025/02/19 [Freesurfer] Inquiry Regarding FreeSurfer Usage in Clinical Trials Yeh Shang Ming
2025/02/18 [Freesurfer] CSF Volume difference between recon-all-clinical and SAMSEG Taghizadeh Mortezaei, Nima
2025/02/17 [Freesurfer] hounsfield units based in some aseg.mgz labels Gonzalo Rojas Costa
2025/02/17 Re: [Freesurfer] ERC_bayesian_segmentation is not shipped in the nightly dev build fsbuild
2025/02/17 [Freesurfer] hounsfield units for some aseg.mgz labels Gonzalo Rojas Costa
2025/02/17 [Freesurfer] ERC_bayesian_segmentation is not shipped in the nightly dev build Chourrout, Matthieu
2025/02/16 [Freesurfer] Optimizing FreeSurfer for Mouse brain Ramesh Babu
2025/02/16 Re: [Freesurfer] recon-all failed Paola Di Filippo
2025/02/15 Re: [Freesurfer] recon-all failed fsbuild
2025/02/15 [Freesurfer] recon-all failed Paola Di Filippo
2025/02/14 [Freesurfer] Unusual Cortical Thickness Measurements in Specific Regions hmarz...@student.ubc.ca
2025/02/14 Re: [Freesurfer] freeview runtime error... Gonzalo Rojas Costa
2025/02/14 Re: [Freesurfer] FreeSurfer coordinates Huang, Yujing
2025/02/14 [Freesurfer] Issue with Voxel Size Mismatch in Samseg-Long Pipeline Taghizadeh Mortezaei, Nima
2025/02/14 Re: [Freesurfer] freeview runtime error... fsbuild
2025/02/14 Re: [Freesurfer] FreeSurfer coordinates Yang Yifan
2025/02/13 Re: [Freesurfer] freeview runtime error... Gonzalo Rojas Costa
2025/02/12 Re: [Freesurfer] freeview runtime error... fsbuild
2025/02/12 [Freesurfer] freeview runtime error... Gonzalo Rojas Costa
2025/02/12 Re: [Freesurfer] Inquiry About Longitudinal Analysis Using recon-all-clinical.sh Iglesias Gonzalez, Juan E.
2025/02/12 Re: [Freesurfer] ROI analysis in the MNI305 space Douglas N. Greve
2025/02/12 Re: [Freesurfer] windows-based software to read freesurfer images... Douglas N. Greve
2025/02/12 Re: [Freesurfer] recon-all: aparc+aseg.mgz missing labels Douglas N. Greve
2025/02/12 [Freesurfer] Issue with Voxel Size Mismatch in Samseg-Long Pipeline Taghizadeh Mortezaei, Nima
2025/02/12 Re: [Freesurfer] Compute Cortical Thickness for grouped ROIs Douglas N. Greve
2025/02/12 Re: [Freesurfer] Vertex Correspondences in Icosahedral Mesh Downsampling Douglas N. Greve
2025/02/12 Re: [Freesurfer] fixing/editing white matter surface Douglas N. Greve
2025/02/12 [Freesurfer] Research assistant position in Saygin developmental cognitive neuroscience lab Saygin, Zeynep
2025/02/12 Re: [Freesurfer] histo atlas and sTIV Iglesias Gonzalez, Juan E.
2025/02/12 [Freesurfer] histo atlas and sTIV Antonio Napolitano
2025/02/11 Re: [Freesurfer] [EXTERNAL] Re: Recon-all error - release 8.0.0-beta fsbuild
2025/02/11 Re: [Freesurfer] [EXTERNAL] Re: Recon-all error - release 8.0.0-beta Yanez-Ramos, Lupita
2025/02/11 Re: [Freesurfer] Recon-all error - release 8.0.0-beta fsbuild
2025/02/11 Re: [Freesurfer] Inquiry About Longitudinal Analysis Using recon-all-clinical.sh Taghizadeh Mortezaei, Nima
2025/02/11 Re: [Freesurfer] Recon-all error - release 8.0.0-beta Huang, Yujing
2025/02/11 [Freesurfer] Recon-all error - release 8.0.0-beta Yanez-Ramos, Lupita
2025/02/11 Re: [Freesurfer] [EXTERNE-EMAIL] Re: [EXTERNE-EMAIL] Re: mri_synthSR on a virtual machine. Graph execution error Zito Giuseppe
2025/02/11 [Freesurfer] Inquiry About Longitudinal Analysis Using recon-all-clinical.sh Taghizadeh Mortezaei, Nima
2025/02/10 [Freesurfer] convert aal3 into .annot file Vianney Salvi
2025/02/10 [Freesurfer] Cortical Thickness Extraction after Dura Correction with Multi-echo MPRAGE KEITH JONES
2025/02/09 Re: [Freesurfer] freeview runtime error... fsbuild
2025/02/09 [Freesurfer] Inquiry About Longitudinal Analysis Using recon-all-clinical.sh Taghizadeh Mortezaei, Nima
2025/02/09 [Freesurfer] freeview runtime error... Gonzalo Rojas Costa
2025/02/08 [Freesurfer] ROI analysis in the MNI305 space neda afzalian
2025/02/08 Re: [Freesurfer] [EXTERNE-EMAIL] Re: mri_synthSR on a virtual machine. Graph execution error fsbuild
2025/02/08 Re: [Freesurfer] [EXTERNE-EMAIL] Re: mri_synthSR on a virtual machine. Graph execution error Zito Giuseppe
2025/02/07 [Freesurfer] windows-based software to read freesurfer images... Gonzalo Rojas Costa
2025/02/07 Re: [Freesurfer] Problem with FreeSurfer 8.0 fsbuild
2025/02/07 Re: [Freesurfer] mri_synthSR on a virtual machine. Graph execution error fsbuild
2025/02/07 [Freesurfer] Problem with FreeSurfer 8.0 Sahil Bajaj
2025/02/07 [Freesurfer] mris_pmake for calculating surface distances between peak vertices and creating vertex ROIs Fanton, Silvia
2025/02/07 [Freesurfer] recon-all: aparc+aseg.mgz missing labels tomjandr...@sky.com
2025/02/07 [Freesurfer] mri_synthSR on a virtual machine. Graph execution error Zito Giuseppe
2025/02/05 Re: [Freesurfer] recon-all failed with FreeSurfer v8.0.0 (beta) on Mac fsbuild
2025/02/05 [Freesurfer] Compute Cortical Thickness for grouped ROIs Rohitkumar DATCHANAMOURTY
2025/02/05 [Freesurfer] Vertex Correspondences in Icosahedral Mesh Downsampling Samuel D Anderson
2025/02/05 Re: [Freesurfer] Regarding Freesurfer for Ubuntu 24.01 fsbuild
2025/02/05 Re: [Freesurfer] mri_TumorSynth: command not found fsbuild
2025/02/05 [Freesurfer] Fw: mri_TumorSynth: command not found Zapaishchykova, Anna
2025/02/05 Re: [Freesurfer] FreeSurfer coordinates Huang, Yujing
2025/02/05 [Freesurfer] FreeSurfer coordinates Yang Yifan
2025/02/04 Re: [Freesurfer] Error in loading wmparc2diff.mgz Ramesh Babu
2025/02/03 Re: [Freesurfer] fixing/editing white matter surface Eszter Boros
2025/02/03 Re: [Freesurfer] Patlak PET/MRI Douglas N. Greve
2025/02/03 Re: [Freesurfer] Automated extraction of dural/meningeal ROI Douglas N. Greve
2025/02/03 Re: [Freesurfer] Subcortical under segmentations Douglas N. Greve
2025/02/03 Re: [Freesurfer] longitudinal analysis on one subject Douglas N. Greve
2025/02/03 Re: [Freesurfer] Error in loading wmparc2diff.mgz Douglas N. Greve
2025/02/02 [Freesurfer] New Postdoc Position in Neuroimaging, Machine Learning and Multi-Omics Joana Braga Pereira
2025/02/02 Re: [Freesurfer] help with freeview - could not connect to display :0 This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem. fsbuild
2025/02/02 Re: [Freesurfer] Error in loading wmparc2diff.mgz Ramesh Babu
2025/02/01 [Freesurfer] longitudinal analysis on one subject Isabella Rossellini
2025/02/01 [Freesurfer] help with freeview - could not connect to display :0 This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem. Paola Di Filippo
2025/01/31 Re: [Freesurfer] Error in loading wmparc2diff.mgz Ramesh Babu
2025/01/31 Re: [Freesurfer] Error in loading wmparc2diff.mgz Huang, Yujing
2025/01/31 Re: [Freesurfer] Error in loading wmparc2diff.mgz Huang, Yujing
2025/01/31 [Freesurfer] Error in loading wmparc2diff.mgz Ramesh Babu
2025/01/31 Re: [Freesurfer] infantFS: expected outputs Zoellner, Frank
2025/01/30 [Freesurfer] Subcortical under segmentations Jeong Yeon Kang
2025/01/30 [Freesurfer] Automated extraction of dural/meningeal ROI Sneha Pandya
2025/01/30 Re: [Freesurfer] Corpus Callosum Missing in SAMSEG Output Douglas N. Greve
2025/01/30 Re: [Freesurfer] Issue with Right Hemisphere Segmentation/Parcellation Douglas N. Greve
2025/01/29 [Freesurfer] FSL Team Research Software Engineer position in Oxford William Clarke
2025/01/28 [Freesurfer] Corpus Callosum Missing in SAMSEG Output Taghizadeh Mortezaei, Nima
2025/01/28 Re: [Freesurfer] Issue with Right Hemisphere Segmentation/Parcellation Taghizadeh Mortezaei, Nima
2025/01/28 Re: [Freesurfer] FreeSurfer 8.0.0 beta error, while calculating the local gyrification index Douglas N. Greve
2025/01/28 [Freesurfer] Patlak PET/MRI Andrade Rey René
2025/01/28 Re: [Freesurfer] Issue with Right Hemisphere Segmentation/Parcellation Douglas N. Greve
2025/01/28 Re: [Freesurfer] Identical values for different cingulate regions Douglas N. Greve
2025/01/27 [Freesurfer] FreeSurfer 8.0.0 beta error, while calculating the local gyrification index Katharina Wittfeld
2025/01/26 [Freesurfer] Identical values for different cingulate regions Taghizadeh Mortezaei, Nima
2025/01/23 Re: [Freesurfer] no Qt platform plugin could be initialized fsbuild
2025/01/23 [Freesurfer] no Qt platform plugin could be initialized Shakour Abuzneid
2025/01/23 Re: [Freesurfer] fixing/editing white matter surface Douglas N. Greve
2025/01/23 Re: [Freesurfer] longitudinal analyses, more than 2 timepoints Douglas N. Greve
2025/01/23 Re: [Freesurfer] recon-all error Douglas N. Greve
2025/01/23 Re: [Freesurfer] [freesurfer] recon-all error Douglas N. Greve
2025/01/23 Re: [Freesurfer] aseg.mgz file not generated after recon-all Douglas N. Greve
2025/01/23 Re: [Freesurfer] Recon-all error... Douglas N. Greve
2025/01/23 Re: [Freesurfer] FreeSurfer 8.0.0-beta: Stack smashing and normalization failures with 7T MP2RAGE data Douglas N. Greve
2025/01/23 Re: [Freesurfer] Freesurfer crashing (gui) or exting with error (command line) fsbuild
2025/01/23 [Freesurfer] Freesurfer crashing (gui) or exting with error (command line) Claas Philip Nähle
2025/01/22 [Freesurfer] Q: Tracula dmrirc file - set usethalnuc Kancsar Diana
2025/01/21 Re: [Freesurfer] SegmentAAN tool fsbuild
2025/01/21 [Freesurfer] fixing/editing white matter surface Eszter Boros
2025/01/21 Re: [Freesurfer] NextBrain: no segment_fast or segment_fireants.py Iglesias Gonzalez, Juan E.
2025/01/21 [Freesurfer] SegmentAAN tool Todd L Richards
2025/01/20 [Freesurfer] SegmentAAN tool Todd L Richards
2025/01/20 Re: [Freesurfer] NextBrain: no segment_fast or segment_fireants.py fsbuild
2025/01/20 Re: [Freesurfer] Freesurfer remotely processing fsbuild
2025/01/20 Re: [Freesurfer] Freesurfer remotely processing Fischl, Bruce R.,PHD
2025/01/20 [Freesurfer] Freesurfer remotely processing Gonzalo Rojas Costa
2025/01/20 [Freesurfer] NextBrain: no segment_fast or segment_fireants.py AmirHussein Abdolalizadeh
2025/01/17 Re: [Freesurfer] longitudinal analyses, more than 2 timepoints Huang, Yujing
2025/01/17 Re: [Freesurfer] longitudinal analyses, more than 2 timepoints Eszter Boros
2025/01/17 Re: [Freesurfer] longitudinal analyses, more than 2 timepoints Eszter Boros
2025/01/17 Re: [Freesurfer] NeuroQuant comparison? Fischl, Bruce R.,PHD
2025/01/17 [Freesurfer] NeuroQuant comparison? allio34...@aol.com
2025/01/15 Re: [Freesurfer] longitudinal analyses, more than 2 timepoints Huang, Yujing
2025/01/15 [Freesurfer] longitudinal analyses, more than 2 timepoints Eszter Boros
2025/01/15 [Freesurfer] consensus on mp2rage or other t1w mri at 7T Jiaen Liu
2025/01/15 [Freesurfer] aseg.mgz file not generated after recon-all Sara Rapuc
2025/01/13 Re: [Freesurfer] Issue with mri_histo_atlas_segment_fireants Command Iglesias Gonzalez, Juan E.
2025/01/13 Re: [Freesurfer] Missing Choroid Plexus Segmentation in final output Iglesias Gonzalez, Juan E.
2025/01/13 Re: [Freesurfer] Issue with mri_histo_atlas_segment_fireants Command Huang, Yujing
2025/01/13 [Freesurfer] Issue with mri_histo_atlas_segment_fireants Command Taghizadeh Mortezaei, Nima
2025/01/13 Re: [Freesurfer] freeview slow in vnc Jiaen Liu
2025/01/12 Re: [Freesurfer] SegmentAAN tool fsbuild
2025/01/12 Re: [Freesurfer] freeview slow in vnc fsbuild
2025/01/12 [Freesurfer] freeview slow in vnc Jiaen Liu
2025/01/11 Re: [Freesurfer] New user allio34...@aol.com
2025/01/11 Re: [Freesurfer] New user Fischl, Bruce R.,PHD