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Hello all

I’m running the recon-all tool :    recon-all -all -sd .   -subjid  FS    -i   
${subj}_T1_al.nii
It works fine, but at some point, the program stops and asks at the terminal:

writing to orig_nu.mgz...
rm: descend into write-protected directory './tmp.mri_nu_correct.mni.41843'? y
rm: remove write-protected directory './tmp.mri_nu_correct.mni.41843'? y

and I have to answer “y”,
but if I’m not checking it just sits and waits and take so much time…

do you have any idea what might case that?
I have all the permissions on the directories.

Best
Patrick


===================
Patrick Bédard, PhD, [C]
Scientist
National Institutes of Health
National Institute of Neurological Disorders and Stroke

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