External Email - Use Caution
Assuming that you have set SUBJECTS_DIR to a path where you have
read/write permission, then I wonder if you have an alias defined in your shell
such that the rm command contains “-I” (the interactive switch) which would
force rm to ask you for permission every time it wants to remove something.
Type “alias” into your shell prompt and see if something shows up for
the remove command. If so then I would remove that alias from your
environment with unalias.
$ alias... look for output containing rm -i ...
$ unalias rm
-R
On Mar 31, 2025, at 20:48, Bedard, Patrick (NIH/NINDS) [C]
<patrick.bed...@nih.gov>
wrote: External Email - Use
Caution Hello all I’m
running the recon-all tool : recon-all -all -sd .
-subjid FS -i
${subj}_T1_al.niiIt works fine, but at some point, the program
stops and asks at the terminal: writing to orig_nu.mgz...rm: descend into
write-protected directory './tmp.mri_nu_correct.mni.41843'? yrm: remove
write-protected directory './tmp.mri_nu_correct.mni.41843'? y and I have
to answer “y”,but if I’m not checking it just sits and waits and take so much
time… do you have any idea what might case that?I have all the permissions
on the directories. BestPatrick ===================Patrick
Bédard, PhD, [C]ScientistNational Institutes of HealthNational Institute of
Neurological Disorders and
Stroke _______________________________________________Freesurfer mailing
listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
