Can you attach your recon-all.log?
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Ni, Zhen (NIH/NINDS) [C]
Sent: Wednesday, March 12, 2025 7:56 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] autorecon1_norm.mgz not found
External Email - Use Caution
Hello,
I'm using the command "recon-all -autorecon1 -subjid $SUBJECTNAME".
After about 2 hours, there are a few mgz and other files generated in the /mri
directory, however, I got an error message:
WARNING: entowm has very low volumes so not using it to edit GA of cortex label
#--------------------------------------
#@# CC Seg Mon Mar 10 19:13:32 EDT 2025
\n seg2cc --s sub-002 \n
ERROR: cannot find /Applications/freesurfer/8.0.0/subjects/sub-002/mri/norm.mgz
Darwin nzs-MacBook-Air.local 23.6.0 Darwin Kernel Version 23.6.0: Fri Jul 5
17:54:20 PDT 2024; root:xnu-10063.141.1~2/RELEASE_X86_64 x86_64
recon-all -s sub-002 exited with ERRORS at Mon Mar 10 19:13:33 EDT 2025
I wonder if you have any idea to fix the problem.
Zhen
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