First of all, can you confirm that that file exists and is readable by you?
On 3/28/2025 2:31 PM, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
Ok,
I found the problem, but now when I run in the terminal is telling me
that a file is missing and the file is not missing. What should I do?
aparcstats2table --hemi rh --subjectsfile subjects.txt --meas
thickness --tablefile aparc-stats-thickness.txt
SUBJECTS_DIR : /home/rosalia/Desktop/CAN_RUTI
Parsing the .stats files
*ERROR: Cannot find stats file
/home/rosalia/Desktop/CAN_RUTI/sub-012_ses-BSL/stats/rh.aparc.stats*
rosalia@rosalia-Lenovo-Y520-15IKBN:~/Desktop/CAN_RUTI$
rosalia@rosalia-Lenovo-Y520-15IKBN:~/Desktop/CAN_RUTI/sub-012_ses-BSL/stats$
ls
aseg.stats lh.BA_exvivo.thresh.stats rh.BA_exvivo.stats
brainvol.stats lh.curv.stats rh.BA_exvivo.thresh.stats
lh.aparc.a2009s.stats lh.w-g.pct.stats rh.curv.stats
lh.aparc.DKTatlas.stats rh.aparc.a2009s.stats rh.w-g.pct.stats
lh.aparc.pial.stats rh.aparc.DKTatlas.stats subjects.txt
lh.aparc.stats rh.aparc.pial.stats wmparc.stats
lh.BA_exvivo.stats *rh.aparc.stats*
rosalia@rosalia-Lenovo-Y520-15IKBN:~/Desktop/CAN_RUTI/sub-012_ses-BSL/stats$
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On Fri, Mar 28, 2025 at 7:13 PM Rosalia Dacosta Aguayo
<rdacos...@gmail.com> wrote:
Dear Freesurfer team,
I am having a trouble with aparcstats2table I have never seen
before and I do not know how to solve it.
I have run it with --help and still I don't quite understand it.
Any help would be appreciated.
Kind regards,
Rosie
rosalia@rosalia-Lenovo-Y520-15IKBN:~/Desktop/CAN_RUTI$
aparcstats2table --hemi rh --subjects sub-012_ses-BSL
sub-012_ses-FU1 sub-012_ses-FU2 sub-013_ses-BSL sub-013_ses-FU1
sub-013_ses-FU2 sub-014_ses-BSL sub-014_ses-FU1 sub-014_ses-FU2
sub-015_ses-BSL sub-015_ses-FU1 sub-015_ses-FU2 sub-016_ses-BSL
sub-017_ses-BSL sub-017_ses-FU1 sub-017_ses-FU2 sub-019_ses-BSL
sub-019_ses-FU1 sub-019_ses-FU2 sub-020_ses-BSL sub-020_ses-FU1
sub-020_ses-FU2 sub-021_ses-BSL sub-021_ses-FU1 sub-021_ses-FU2
sub-022_ses-BSL sub-022_ses-FU1 sub-022_ses-FU2 sub-023_ses-BSL
sub-023_ses-FU1 sub-023_ses-FU2 sub-024_ses-BSL sub-024_ses-FU1
sub-024_ses-FU2 sub-025_ses-BSL sub-028_ses-BSL sub-028_ses-FU1
sub-029_ses-BSL sub-029_ses-FU1 sub-029_ses-FU2 sub-030_ses-BSL
sub-030_ses-FU1 sub-030_ses-FU2 sub-031_ses-BSL sub-031_ses-FU1
sub-031_ses-FU2 sub-032_ses-BSL sub-032_ses-FU2 sub-033_ses-BSL
sub-033_ses-FU1 sub-033_ses-FU2 sub-034_ses-BSL sub-034_ses-FU1
sub-035_ses-BSL sub-035_ses-FU1 sub-035_ses-FU2 sub-036_ses-BSL
sub-036_ses-FU1 sub-036_ses-FU2 sub-037_ses-BSL sub-038_ses-BSL
sub-038_ses-FU1 sub-038_ses-FU2 sub-039_ses-BSL sub-039_ses-FU1
sub-039_ses-FU2 sub-040_ses-BSL sub-040_ses-FU1 sub-040_ses-FU2
sub-041_ses-BSL sub-041_ses-FU1 sub-041_ses-FU2 sub-042_ses-BSL
sub-042_ses-FU1 sub-043_ses-BSL sub-044_ses-BSL sub-045_ses-BSL
sub-046_ses-BSL sub-046_ses-FU1 sub-046_ses-FU2 sub-047_ses-BSL
sub-047_ses-FU1 sub-047_ses-FU2 sub-048_ses-BSL sub-051_ses-BSL
sub-051_ses-FU1 sub-051_ses-FU2 sub-053_ses-BSL sub-054_ses-BSL
sub-054_ses-FU1 sub-054_ses-FU2 sub-055_ses-BSL sub-055_ses-FU1
sub-056_ses-BSL sub-056_ses-FU1 sub-056_ses-FU2 sub-057_ses-BSL
sub-058_ses-BSL sub-058_ses-FU1 sub-058_ses-FU2 sub-059_ses-BSL
sub-060_ses-BSL sub-060_ses-FU1 sub-060_ses-FU2 sub-061_ses-BSL
sub-061_ses-FU1 sub-061_ses-FU2 sub-062_ses-BSL sub-062_ses-FU2
sub-063_ses-BSL sub-064_ses-BSL sub-064_ses-FU1 sub-064_ses-FU2
sub-065_ses-BSL sub-065_ses-FU1 sub-065_ses-FU2 sub-067_ses-BSL
sub-068_ses-BSL sub-068_ses-FU1 sub-068_ses-FU2 sub-069_ses-BSL
sub-070_ses-BSL sub-070_ses-FU1 sub-070_ses-FU2 sub-071_ses-BSL
sub-072_ses-BSL sub-072_ses-FU1 sub-072_ses-FU2 sub-073_ses-BSL
sub-074_ses-BSL sub-074_ses-FU1 sub-074_ses-FU2 sub-075_ses-BSL
sub-075_ses-FU1 sub-075_ses-FU2 sub-076_ses-BSL sub-077_ses-BSL
sub-077_ses-FU1 sub-077_ses-FU2 sub-078_ses-BSL sub-079_ses-BSL
sub-079_ses-FU1 sub-079_ses-FU2 sub-080_ses-BSL sub-080_ses-FU1
sub-080_ses-FU2 sub-081_ses-BSL sub-082_ses-BSL sub-082_ses-FU1
sub-082_ses-FU2 sub-083_ses-FU1 sub-083_ses-FU2 sub-084_ses-BSL
sub-084_ses-FU1 sub-084_ses-FU2 sub-085_ses-BSL sub-085_ses-FU1
sub-085_ses-FU2 sub-086_ses-BSL sub-086_ses-FU1 sub-086_ses-FU2
sub-087_ses-BSL sub-087_ses-FU1 sub-087_ses-FU2 sub-088_ses-BSL
sub-088_ses-FU1 sub-088_ses-FU2 sub-089_ses-BSL sub-089_ses-FU1
sub-089_ses-FU2 sub-090_ses-BSL --meas thickness --tablefile
aparc-stats-thickness.txt
*ERROR: Specify one of --subjects, --subjectsfile --qdec or
--qdec-long*
or run with --help for help.
____________________________________________________________________________
Aquest missatge, i els fitxers adjunts que hi pugui haver, pot
contenir informació confidencial o protegida legalment i s’adreça
exclusivament a la persona o entitat destinatària. Si no consteu
com a destinatari final o no teniu l’encàrrec de rebre’l, no esteu
autoritzat a llegir-lo, retenir-lo, modificar-lo, distribuir-lo,
copiar-lo ni a revelar-ne el contingut. Si l’heu rebut per error,
informeu-ne el remitent i elimineu del sistema tant el missatge
com els fitxers adjunts que hi pugui haver.
Este mensaje, y los ficheros adjuntos que pueda incluir, puede
contener información confidencial o legalmente protegida y está
exclusivamente dirigido a la persona o entidad destinataria. Si
usted no consta como destinatario final ni es la persona encargada
de recibirlo, no está autorizado a leerlo, retenerlo, modificarlo,
distribuirlo o copiarlo, ni a revelar su contenido. Si lo ha
recibido por error, informe de ello al remitente y elimine del
sistema tanto el mensaje como los ficheros adjuntos que pueda
contener.
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for the individual or organization to whom they are addressed. If
you are not the intended recipient of this message or the person
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