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I found the problem, but now when I run in the terminal is telling me that a file is missing and the file is not missing. What should I do? aparcstats2table --hemi rh --subjectsfile subjects.txt --meas thickness --tablefile aparc-stats-thickness.txt SUBJECTS_DIR : /home/rosalia/Desktop/CAN_RUTI Parsing the .stats files *ERROR: Cannot find stats file /home/rosalia/Desktop/CAN_RUTI/sub-012_ses-BSL/stats/rh.aparc.stats* rosalia@rosalia-Lenovo-Y520-15IKBN:~/Desktop/CAN_RUTI$ rosalia@rosalia-Lenovo-Y520-15IKBN:~/Desktop/CAN_RUTI/sub-012_ses-BSL/stats$ ls aseg.stats lh.BA_exvivo.thresh.stats rh.BA_exvivo.stats brainvol.stats lh.curv.stats rh.BA_exvivo.thresh.stats lh.aparc.a2009s.stats lh.w-g.pct.stats rh.curv.stats lh.aparc.DKTatlas.stats rh.aparc.a2009s.stats rh.w-g.pct.stats lh.aparc.pial.stats rh.aparc.DKTatlas.stats subjects.txt lh.aparc.stats rh.aparc.pial.stats wmparc.stats lh.BA_exvivo.stats *rh.aparc.stats* rosalia@rosalia-Lenovo-Y520-15IKBN:~/Desktop/CAN_RUTI/sub-012_ses-BSL/stats$ ____________________________________________________________________________ Aquest missatge, i els fitxers adjunts que hi pugui haver, pot contenir informació confidencial o protegida legalment i s’adreça exclusivament a la persona o entitat destinatària. Si no consteu com a destinatari final o no teniu l’encàrrec de rebre’l, no esteu autoritzat a llegir-lo, retenir-lo, modificar-lo, distribuir-lo, copiar-lo ni a revelar-ne el contingut. Si l’heu rebut per error, informeu-ne el remitent i elimineu del sistema tant el missatge com els fitxers adjunts que hi pugui haver. Este mensaje, y los ficheros adjuntos que pueda incluir, puede contener información confidencial o legalmente protegida y está exclusivamente dirigido a la persona o entidad destinataria. Si usted no consta como destinatario final ni es la persona encargada de recibirlo, no está autorizado a leerlo, retenerlo, modificarlo, distribuirlo o copiarlo, ni a revelar su contenido. Si lo ha recibido por error, informe de ello al remitente y elimine del sistema tanto el mensaje como los ficheros adjuntos que pueda contener. This email message and any attachments it carries may contain confidential or legally protected material and are intended solely for the individual or organization to whom they are addressed. If you are not the intended recipient of this message or the person responsible for processing it, then you are not authorized to read, save, modify, send, copy or disclose any part of it. If you have received the message by mistake, please inform the sender of this and eliminate the message and any attachments it carries from your account. On Fri, Mar 28, 2025 at 7:13 PM Rosalia Dacosta Aguayo <rdacos...@gmail.com> wrote: > Dear Freesurfer team, > > I am having a trouble with aparcstats2table I have never seen before and I > do not know how to solve it. > > I have run it with --help and still I don't quite understand it. > > Any help would be appreciated. > > Kind regards, > > Rosie > > > rosalia@rosalia-Lenovo-Y520-15IKBN:~/Desktop/CAN_RUTI$ aparcstats2table > --hemi rh --subjects sub-012_ses-BSL sub-012_ses-FU1 sub-012_ses-FU2 > sub-013_ses-BSL sub-013_ses-FU1 sub-013_ses-FU2 sub-014_ses-BSL > sub-014_ses-FU1 sub-014_ses-FU2 sub-015_ses-BSL sub-015_ses-FU1 > sub-015_ses-FU2 sub-016_ses-BSL sub-017_ses-BSL sub-017_ses-FU1 > sub-017_ses-FU2 sub-019_ses-BSL sub-019_ses-FU1 sub-019_ses-FU2 > sub-020_ses-BSL sub-020_ses-FU1 sub-020_ses-FU2 sub-021_ses-BSL > sub-021_ses-FU1 sub-021_ses-FU2 sub-022_ses-BSL sub-022_ses-FU1 > sub-022_ses-FU2 sub-023_ses-BSL sub-023_ses-FU1 sub-023_ses-FU2 > sub-024_ses-BSL sub-024_ses-FU1 sub-024_ses-FU2 sub-025_ses-BSL > sub-028_ses-BSL sub-028_ses-FU1 sub-029_ses-BSL sub-029_ses-FU1 > sub-029_ses-FU2 sub-030_ses-BSL sub-030_ses-FU1 sub-030_ses-FU2 > sub-031_ses-BSL sub-031_ses-FU1 sub-031_ses-FU2 sub-032_ses-BSL > sub-032_ses-FU2 sub-033_ses-BSL sub-033_ses-FU1 sub-033_ses-FU2 > sub-034_ses-BSL sub-034_ses-FU1 sub-035_ses-BSL sub-035_ses-FU1 > sub-035_ses-FU2 sub-036_ses-BSL sub-036_ses-FU1 sub-036_ses-FU2 > sub-037_ses-BSL sub-038_ses-BSL sub-038_ses-FU1 sub-038_ses-FU2 > sub-039_ses-BSL sub-039_ses-FU1 sub-039_ses-FU2 sub-040_ses-BSL > sub-040_ses-FU1 sub-040_ses-FU2 sub-041_ses-BSL sub-041_ses-FU1 > sub-041_ses-FU2 sub-042_ses-BSL sub-042_ses-FU1 sub-043_ses-BSL > sub-044_ses-BSL sub-045_ses-BSL sub-046_ses-BSL sub-046_ses-FU1 > sub-046_ses-FU2 sub-047_ses-BSL sub-047_ses-FU1 sub-047_ses-FU2 > sub-048_ses-BSL sub-051_ses-BSL sub-051_ses-FU1 sub-051_ses-FU2 > sub-053_ses-BSL sub-054_ses-BSL sub-054_ses-FU1 sub-054_ses-FU2 > sub-055_ses-BSL sub-055_ses-FU1 sub-056_ses-BSL sub-056_ses-FU1 > sub-056_ses-FU2 sub-057_ses-BSL sub-058_ses-BSL sub-058_ses-FU1 > sub-058_ses-FU2 sub-059_ses-BSL sub-060_ses-BSL sub-060_ses-FU1 > sub-060_ses-FU2 sub-061_ses-BSL sub-061_ses-FU1 sub-061_ses-FU2 > sub-062_ses-BSL sub-062_ses-FU2 sub-063_ses-BSL sub-064_ses-BSL > sub-064_ses-FU1 sub-064_ses-FU2 sub-065_ses-BSL sub-065_ses-FU1 > sub-065_ses-FU2 sub-067_ses-BSL sub-068_ses-BSL sub-068_ses-FU1 > sub-068_ses-FU2 sub-069_ses-BSL sub-070_ses-BSL sub-070_ses-FU1 > sub-070_ses-FU2 sub-071_ses-BSL sub-072_ses-BSL sub-072_ses-FU1 > sub-072_ses-FU2 sub-073_ses-BSL sub-074_ses-BSL sub-074_ses-FU1 > sub-074_ses-FU2 sub-075_ses-BSL sub-075_ses-FU1 sub-075_ses-FU2 > sub-076_ses-BSL sub-077_ses-BSL sub-077_ses-FU1 sub-077_ses-FU2 > sub-078_ses-BSL sub-079_ses-BSL sub-079_ses-FU1 sub-079_ses-FU2 > sub-080_ses-BSL sub-080_ses-FU1 sub-080_ses-FU2 sub-081_ses-BSL > sub-082_ses-BSL sub-082_ses-FU1 sub-082_ses-FU2 sub-083_ses-FU1 > sub-083_ses-FU2 sub-084_ses-BSL sub-084_ses-FU1 sub-084_ses-FU2 > sub-085_ses-BSL sub-085_ses-FU1 sub-085_ses-FU2 sub-086_ses-BSL > sub-086_ses-FU1 sub-086_ses-FU2 sub-087_ses-BSL sub-087_ses-FU1 > sub-087_ses-FU2 sub-088_ses-BSL sub-088_ses-FU1 sub-088_ses-FU2 > sub-089_ses-BSL sub-089_ses-FU1 sub-089_ses-FU2 sub-090_ses-BSL --meas > thickness --tablefile aparc-stats-thickness.txt > *ERROR: Specify one of --subjects, --subjectsfile --qdec or --qdec-long* > or run with --help for help. > > > > ____________________________________________________________________________ > Aquest missatge, i els fitxers adjunts que hi pugui haver, pot contenir > informació confidencial o protegida legalment i s’adreça exclusivament a la > persona o entitat destinatària. Si no consteu com a destinatari final o no > teniu l’encàrrec de rebre’l, no esteu autoritzat a llegir-lo, retenir-lo, > modificar-lo, distribuir-lo, copiar-lo ni a revelar-ne el contingut. Si > l’heu rebut per error, informeu-ne el remitent i elimineu del sistema tant > el missatge com els fitxers adjunts que hi pugui haver. > > Este mensaje, y los ficheros adjuntos que pueda incluir, puede contener > información confidencial o legalmente protegida y está exclusivamente > dirigido a la persona o entidad destinataria. Si usted no consta como > destinatario final ni es la persona encargada de recibirlo, no está > autorizado a leerlo, retenerlo, modificarlo, distribuirlo o copiarlo, ni a > revelar su contenido. Si lo ha recibido por error, informe de ello al > remitente y elimine del sistema tanto el mensaje como los ficheros adjuntos > que pueda contener. > > This email message and any attachments it carries may contain confidential > or legally protected material and are intended solely for the individual or > organization to whom they are addressed. If you are not the intended > recipient of this message or the person responsible for processing it, then > you are not authorized to read, save, modify, send, copy or disclose any > part of it. If you have received the message by mistake, please inform the > sender of this and eliminate the message and any attachments it carries > from your account. >
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