External Email - Use Caution
Hi Lilla,
Is this pipeline for older infants already available? We are currently working
with a population from 6 months to 10 years old, and we used the infantfs until
3yo, then the adult version.
Best and thank you,
Fernanda
Fernanda Hansen P. de Moraes
fernanda.han...@idor.org
Física Médica e Doutora em Ciências Médicas
Brain Connectivity Unit - Instituto D'Or de Pesquisa e Ensino
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Zollei, Lilla,Ph.D.
<lzol...@mgh.harvard.edu>
Sent: Monday, March 17, 2025 11:11 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Freesurfer Question - Pediatric pathology
Hi Stef,
The infant FreeSurfer pipeline does rely on an infant training data set. What
atlas did you have in mind?
At the moment, there is no way to include a lesion mask into the pipeline, but
I would be happy to discuss that option.
Also, for your population, older infants, we have another pipeline you might
want to try. Le me know whether you are interested,
Lilla
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Stefanie Bradley
<stefanie.brad...@mail.utoronto.ca>
Sent: Monday, March 17, 2025 9:53 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Freesurfer Question - Pediatric pathology
External Email - Use Caution
Hi there,
I'm working with MRI scans from children aged 3-6 years old. I was wondering if
there's a way to integrate pediatric atlases into the Freesurfer recon-all
pipeline?
I'm also wondering if it's possible to integrate a lesion mask into the
pipeline in the case of brain pathology?
Thanks,
Stef
STEFANIE BRADLEY
PHD CANDIDATE
Holland Bloorview Kids Rehab Hospital
150 Kilgour Rd, Toronto, ON M4G 1R8
stefanie.brad...@mail.utoronto.ca
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