Messages by Date
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2024/09/30
Re: [Freesurfer] Efficient printing of freeview screenshots through freeview [HPC]
Wang, Ruopeng
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2024/09/30
Re: [Freesurfer] petsurfer using brainstem subfields
Douglas N. Greve
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2024/09/30
Re: [Freesurfer] FreeSurfer - extract rigid parameters from .lta file
Douglas N. Greve
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2024/09/30
Re: [Freesurfer] morphometry protocol - cross site/platform?
Douglas N. Greve
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2024/09/30
Re: [Freesurfer] NextBrain with 333 labels
Iglesias Gonzalez, Juan E.
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2024/09/30
[Freesurfer] Efficient printing of freeview screenshots through freeview [HPC]
Camilo Castelblanco Riveros
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2024/09/29
[Freesurfer] NextBrain with 333 labels
Woo-Suk Tae
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2024/09/29
Re: [Freesurfer] Qt platform and lta_convert error
fsbuild
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2024/09/29
Re: [Freesurfer] Freesurfer - skull stripping error
De Giorgi, Sara
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2024/09/29
Re: [Freesurfer] Freesurfer - skull stripping error
Joshua K Lee
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2024/09/29
Re: [Freesurfer] Freesurfer - skull stripping error
Fischl, Bruce R.,PHD
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2024/09/29
Re: [Freesurfer] Freesurfer - skull stripping error
De Giorgi, Sara
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2024/09/29
[Freesurfer] FreeSurfer - extract rigid parameters from .lta file
noga.ker...@campus.technion.ac.il
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2024/09/29
Re: [Freesurfer] Freesurfer - skull stripping error
Fischl, Bruce R.,PHD
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2024/09/28
Re: [Freesurfer] Freesurfer - skull stripping error
William Baare
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2024/09/28
[Freesurfer] Qt platform and lta_convert error
Mohammad Amin Khodadadegan
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2024/09/27
[Freesurfer] dev builds available for rocky Linux and silicon MacOS (M1, M2, M3 processors)
fsbuild
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2024/09/26
[Freesurfer] morphometry protocol - cross site/platform?
Mira Michelle Raman
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2024/09/25
[Freesurfer] Repost: NextBrain Segmentation PyTorch-GPU Compatibility Error
AmirHussein Abdolalizadeh
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2024/09/23
[Freesurfer] trac-all longitudinal error
Nelson, Eric (Campus)
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2024/09/23
Re: [Freesurfer] infantFS: expected outputs
Zoellner, Frank
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2024/09/22
Re: [Freesurfer] Questions re Freesurfer editing
Bronwyn Overs
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2024/09/22
Re: [Freesurfer] infantFS: expected outputs
Zollei, Lilla,Ph.D.
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2024/09/20
[Freesurfer] fresurfer on silicon macs (was Re: Trying to run freeview via Docker/XQuartz and it just aborts
fsbuild
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2024/09/20
[Freesurfer] Trying to run freeview via Docker/XQuartz and it just aborts
Belakovski, Nickolai
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2024/09/20
Re: [Freesurfer] petsurfer using brainstem subfields
Sneha Pandya
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2024/09/20
Re: [Freesurfer] Questions re Freesurfer editing
Douglas N. Greve
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2024/09/20
Re: [Freesurfer] Hippocampal segmentation on two sets of MRI with different resolution
Iglesias Gonzalez, Juan E.
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2024/09/20
Re: [Freesurfer] Hippocampal segmentation on two sets of MRI with different resolution
Douglas N. Greve
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2024/09/20
Re: [Freesurfer] petsurfer using brainstem subfields
Douglas N. Greve
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2024/09/20
Re: [Freesurfer] Transforming aseg.mgz to native anatomical space - transform files absent
Christine Farrugia
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2024/09/19
[Freesurfer] Hippocampal segmentation on two sets of MRI with different resolution
Jacob Bunyamin
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2024/09/19
Re: [Freesurfer] Running Freeview from Ubuntu (on WSL)
fsbuild
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2024/09/19
Re: [Freesurfer] Running Freeview from Ubuntu
Barsotti, Ercole
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2024/09/19
Re: [Freesurfer] Transforming aseg.mgz to native anatomical space - transform files absent
Huang, Yujing
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2024/09/19
Re: [Freesurfer] BA1_exvivo does not exist in SUBJECTS_DIR fsaverage
Huang, Yujing
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2024/09/19
[Freesurfer] BA1_exvivo does not exist in SUBJECTS_DIR fsaverage
Sambamoorthy, Sowmya
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2024/09/19
Re: [Freesurfer] Transforming aseg.mgz to native anatomical space - transform files absent
Christine Farrugia
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2024/09/19
Re: [Freesurfer] Transforming aseg.mgz to native anatomical space - transform files absent
Huang, Yujing
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2024/09/18
[Freesurfer] Running Freeview from Ubuntu
Barsotti, Ercole
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2024/09/18
Re: [Freesurfer] petsurfer using brainstem subfields
Sneha Pandya
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2024/09/18
Re: [Freesurfer] FreeSurfer License Error
fsbuild
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2024/09/18
[Freesurfer] FreeSurfer License Error
Barsotti, Ercole
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2024/09/18
[Freesurfer] Transforming aseg.mgz to native anatomical space - transform files absent
Christine Farrugia
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2024/09/17
Re: [Freesurfer] Error in dt_recon
Ramesh Babu
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2024/09/17
[Freesurfer] trac-all longitudinal error
Nelson, Eric (Campus)
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2024/09/17
Re: [Freesurfer] Question on lateral ventricle segmentation
Douglas N. Greve
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2024/09/17
Re: [Freesurfer] (no subject)
Douglas N. Greve
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2024/09/17
Re: [Freesurfer] Error in dt_recon
Douglas N. Greve
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2024/09/16
Re: [Freesurfer] Hippocampus Subfields Stats (FreeSurfer v7.3.2)
Nolan, Jackson
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2024/09/16
Re: [Freesurfer] Visualizing brain features
Fischl, Bruce R.,PHD
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2024/09/15
[Freesurfer] Visualizing brain features
Banerjee, Tania
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2024/09/15
Re: [Freesurfer] mri_synthseg on Mac M3
Valerian Altersberger
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2024/09/13
Re: [Freesurfer] Ongoing issue with Mac
fsbuild
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2024/09/13
[Freesurfer] Ongoing issue with Mac
Alisha Davis
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2024/09/13
Re: [Freesurfer] mri_synthseg on Mac M3
Tregidgo, Henry
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2024/09/12
[Freesurfer] Error in dt_recon
Ramesh Babu
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2024/09/11
Re: [Freesurfer] Freesurfer 7.4.0 and CUDA versions (was Re: (no subject))
Matthew Lynch
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2024/09/11
Re: [Freesurfer] SAMSEG - hanging for FLAIR lesion segmentation
Alisha Davis
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2024/09/10
[Freesurfer] Freesurfer 7.4.0 and CUDA versions (was Re: (no subject))
fsbuild
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2024/09/10
Re: [Freesurfer] Installer for Silicon M1, M2, M3 Macs (was Re: Freesurfer for MacOS))
fsbuild
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2024/09/10
Re: [Freesurfer] Installer for Silicon M1, M2, M3 Macs (was Re: Freesurfer for MacOS))
Alisha Davis
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2024/09/10
[Freesurfer] NIH R25 Course : Training in Advanced Statistical Methods in Neuroimaging and Genetics, Salt Lake City, Utah, April 7-18, 2025.
ROBERT CARY WELSH
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2024/09/09
[Freesurfer] (no subject)
Matthew Lynch
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2024/09/09
[Freesurfer] Installer for Silicon M1, M2, M3 Macs (was Re: Freesurfer for MacOS))
fsbuild
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2024/09/09
[Freesurfer] Freesurfer for MacOS
Alisha Davis
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2024/09/09
Re: [Freesurfer] installation on Linux server incompatible with python2?
fsbuild
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2024/09/09
[Freesurfer] installation on Linux server incompatible with python2?
Gowin, Joshua
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2024/09/09
[Freesurfer] UNABLE TO MAKE EDITS AFTER SIMNIBS
Cesar Zabdiel Gutierrez Mendoza (czgtrrzm)
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2024/09/08
[Freesurfer] Question on lateral ventricle segmentation
Necati Emre Şahin
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2024/09/08
[Freesurfer] mri_synthseg on Mac M3
Valerian Altersberger
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2024/09/08
[Freesurfer] How do we account for different scanner/acquisition parameters in the FreeSurfer longitudinal pipeline?
Yoonho Hwang
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2024/09/08
Re: [Freesurfer] Using a newer version of FS for longitudinal processing
fsbuild
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2024/09/08
[Freesurfer] Using a newer version of FS for longitudinal processing
Bronwyn Overs
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2024/09/07
[Freesurfer] Combining left and right hemisphere segmentation files
Mengjie Huang
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2024/09/06
[Freesurfer] SAMSEG - hanging for FLAIR lesion segmentation
Stefano Cerri
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2024/09/05
Re: [Freesurfer] cortical thickness measurements
AJ
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2024/09/05
[Freesurfer] SAMSEG - hanging for FLAIR lesion segmentation
Sravanthi Upadrasta
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2024/09/04
Re: [Freesurfer] License issues
fsbuild
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2024/09/04
[Freesurfer] Obtaining Detailed Lateral Ventricle Segmentati
Necati Emre Şahin
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2024/09/04
[Freesurfer] License issues
Le Prieult , Yéléna
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2024/09/03
Re: [Freesurfer] Error in SegmentSubfieldsT1Longitudinal (line 2148)
Iglesias Gonzalez, Juan E.
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2024/09/02
[Freesurfer] atlas for subregional precentral gyrus
Woo-Suk Tae
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2024/09/02
Re: [Freesurfer] When release a version for ubuntu24?
fsbuild
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2024/09/02
[Freesurfer] When release a version for ubuntu24?
Chunling Hu
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2024/08/30
Re: [Freesurfer] Help with samseg
fsbuild
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2024/08/30
Re: [Freesurfer] Help with samseg
Cacciaguerra, Laura, M.D., Ph.D.
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2024/08/27
[Freesurfer] petsurfer using brainstem subfields
Sneha Pandya
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2024/08/27
Re: [Freesurfer] Question on hippocampus segmentation algorithm
Savoia, Alice (Stud. FPN)
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2024/08/27
Re: [Freesurfer] Question on hippocampus segmentation algorithm
Iglesias Gonzalez, Juan E.
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2024/08/27
[Freesurfer] Question on hippocampus segmentation algorithm
Savoia, Alice (Stud. FPN)
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2024/08/26
[Freesurfer] FSGD Error
Recht, Grace Owen
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2024/08/26
Re: [Freesurfer] petsurfer questions - No PVC stats file in the similar format as gtm.stats.dat
Sneha Pandya
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2024/08/26
[Freesurfer] Combining masks mri_binarize
Sorby-Adams, Annabel
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2024/08/26
[Freesurfer] Extracting cortical thickness from a sphere with different coordinates for different participants.
Michel , Léa
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2024/08/23
[Freesurfer] Freesurfer Longitudinal analysis
De Giorgi, Sara
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2024/08/23
Re: [Freesurfer] Longitudinal base processing error
Douglas N. Greve
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2024/08/23
Re: [Freesurfer] Recon-all -all for many MRI sequences?
Douglas N. Greve
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2024/08/23
Re: [Freesurfer] petsurfer questions - No PVC stats file in the similar format as gtm.stats.dat
Douglas N. Greve
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2024/08/22
[Freesurfer] Recon-all -all for many MRI sequences?
김유진
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2024/08/22
[Freesurfer] petsurfer questions - No PVC stats file in the similar format as gtm.stats.dat
Sneha Pandya
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2024/08/22
[Freesurfer] TRACULA with multi-shell DWI
Fromm, Anna
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2024/08/21
Re: [Freesurfer] PetSurfer: PET SUVR analysis
Douglas N. Greve
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2024/08/21
Re: [Freesurfer] How to change mri_convert --conform to use another flag while running recon-all
Douglas N. Greve
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2024/08/21
Re: [Freesurfer] PetSurfer: how to convert nopvc.nii.gz to a format like gtm.stats.dat?
Douglas N. Greve
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2024/08/19
Re: [Freesurfer] PetSurfer: how to convert nopvc.nii.gz to a format like gtm.stats.dat?
WONG Wan Wa
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2024/08/19
Re: [Freesurfer] How to change mri_convert --conform to use another flag while running recon-all
Jeiran Choupan
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2024/08/16
Re: [Freesurfer] Ubuntu 24.04 compatibility? (libc6 < 2.36, libncurses5)
fsbuild
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2024/08/16
[Freesurfer] Ubuntu 24.04 compatibility? (libc6 < 2.36, libncurses5)
Hunter Buchanan
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2024/08/16
Re: [Freesurfer] recon-all terminates at fix topology rh step
fsbuild
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2024/08/15
Re: [Freesurfer] mri_easyreg
fsbuild
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2024/08/15
[Freesurfer] How to change mri_convert --conform to use another flag while running recon-all
Jeiran Choupan
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2024/08/15
Re: [Freesurfer] mri_easyreg
Sara Ponticorvo
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2024/08/15
Re: [Freesurfer] Calculating gray matter volume and BPF from Samseg output
Koen Van Leemput
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2024/08/14
Re: [Freesurfer] mri_easyreg
fsbuild
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2024/08/14
[Freesurfer] PetSurfer: how to convert nopvc.nii.gz to a format like gtm.stats.dat?
WONG Wan Wa
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2024/08/14
[Freesurfer] mri_easyreg
Sara Ponticorvo
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2024/08/14
[Freesurfer] Comparison of "segment_subregions" and "recon-all"
Yoonho Hwang
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2024/08/13
Re: [Freesurfer] freesurfer version 6 on Debian
fsbuild
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2024/08/13
[Freesurfer] freesurfer version 6 on Debian
Gregory Book
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2024/08/12
[Freesurfer] PetSurfer: PET SUVR analysis
WONG Wan Wa
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2024/08/12
Re: [Freesurfer] Save (any/open) path in freeview
Wang, Ruopeng
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2024/08/10
[Freesurfer] Save (any/open) path in freeview
Marianne Duyck
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2024/08/10
Re: [Freesurfer] mri_watershed Error: GLOBAL region of the brain empty !
Fischl, Bruce R.,PHD
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2024/08/10
[Freesurfer] mri_watershed Error: GLOBAL region of the brain empty !
李志豪
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2024/08/10
Re: [Freesurfer] mideface: facemask not found
Aaron Tanenbaum
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2024/08/09
Re: [Freesurfer] Hypothalamic region segmentation
fsbuild
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2024/08/09
[Freesurfer] mideface: facemask not found
Aaron Tanenbaum
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2024/08/09
[Freesurfer] Hypothalamic region segmentation
Raphaela C
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2024/08/09
[Freesurfer] Inconsistency between mean cluster cortical thickness value and lme_lowessPlot
Dan Levitas
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2024/08/09
[Freesurfer] making the face mask thicker mideface
Aaron Tanenbaum
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2024/08/08
[Freesurfer] Calculating gray matter volume and BPF from Samseg output
Maaike Romme
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2024/08/08
Re: [Freesurfer] brain volumetry via Samseg and recon-all
Koen Van Leemput
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2024/08/07
Re: [Freesurfer] Older tksurfer and tkmedit (FS version 5.0.0) fail to launch: glut issue?
fsbuild
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2024/08/07
[Freesurfer] Older tksurfer and tkmedit (FS version 5.0.0) fail to launch: glut issue?
Raij, Tommi A.
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2024/08/07
Re: [Freesurfer] Tksurfer and freeview
fsbuild
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2024/08/07
[Freesurfer] Extract surface vertex IDs from significance map
Dan Levitas
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2024/08/07
[Freesurfer] Extract surface vertex IDs from significance map
Dan Levitas
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2024/08/07
Re: [Freesurfer] [ext] Re: Question/potential bug regarding mri_convert and .gca files
Fischl, Bruce R.,PHD
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2024/08/07
Re: [Freesurfer] [ext] Re: Question/potential bug regarding mri_convert and .gca files
Siegel, Nys Tjade
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2024/08/07
Re: [Freesurfer] [ext] Re: Question/potential bug regarding mri_convert and .gca files
Huang, Yujing
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2024/08/07
Re: [Freesurfer] [ext] Re: Question/potential bug regarding mri_convert and .gca files
Siegel, Nys Tjade
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2024/08/06
[Freesurfer] WMH-Synthseg Bad CPU type in Executable
Vaughn, Stephen
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2024/08/06
Re: [Freesurfer] Comparison of "segment_subregions" and "recon-all"
Iglesias Gonzalez, Juan E.
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2024/08/05
[Freesurfer] Comparison of "segment_subregions" and "recon-all"
Yoonho Hwang
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2024/08/05
Re: [Freesurfer] mri_easyreg --help error: zsh : illegal hardware instruction mri_easyreg --help
fsbuild
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2024/08/05
[Freesurfer] mri_easyreg --help error: zsh : illegal hardware instruction mri_easyreg --help
Yang, Yaozhi
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2024/08/05
[Freesurfer] Questions about FreeSurfer's longitudinal pipeline prior to longitudinal analysis
Yoonho Hwang
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2024/08/05
Re: [Freesurfer] Question/potential bug regarding mri_convert and .gca files
Fischl, Bruce R.,PHD
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2024/08/05
Re: [Freesurfer] Inquiry on Calculation Methods for Folding Index and Intrinsic Curvature Index in mris_anatomical_stats
Huang, Yujing
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2024/08/05
[Freesurfer] Issues with parallel processing trac-all bedp step
De Giorgi, Sara
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2024/08/05
[Freesurfer] Question/potential bug regarding mri_convert and .gca files
Siegel, Nys Tjade
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2024/08/05
Re: [Freesurfer] Longitudinal analyses using Repeated measures anova
Diers, Kersten /DZNE
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2024/08/05
Re: [Freesurfer] Interpreting LME results with multi-row contrasts
Diers, Kersten /DZNE
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2024/08/02
[Freesurfer] Inquiry on Calculation Methods for Folding Index and Intrinsic Curvature Index in mris_anatomical_stats
littlepotato
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2024/08/02
[Freesurfer] Inquiry on Calculation Methods for Folding Index and Intrinsic Curvature Index in mris_anatomical_stats
littlepotato
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2024/08/01
Re: [Freesurfer] FreeSurfer in fmriprep
Tengwen Fan
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2024/07/31
Re: [Freesurfer] Question: Recon-all Using T1/T2 Mutual Information
Douglas N. Greve
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2024/07/31
Re: [Freesurfer] FreeSurfer in fmriprep
Douglas N. Greve
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2024/07/30
[Freesurfer] Question: Recon-all Using T1/T2 Mutual Information
Edwards, Vincent
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2024/07/30
[Freesurfer] Data Analyst Position at University of Miami Miller School of Medicine
Otero Ospina, Andrea
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2024/07/29
Re: [Freesurfer] FreeSurfer in fmriprep
Tengwen Fan
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2024/07/29
[Freesurfer] brain volumetry via Samseg and recon-all
Ringki Marie Siewert
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2024/07/29
Re: [Freesurfer] FreeSurfer Question
Douglas N. Greve
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2024/07/29
Re: [Freesurfer] FreeSurfer in fmriprep
Douglas N. Greve
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2024/07/29
[Freesurfer] Inquiry About Calculation of Integrated Rectified Gaussian Curvature in mris_anatomical_stats
littlepotato
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2024/07/29
Re: [Freesurfer] Longitudinal analyses using Repeated measures anova
Josefine Tingdal Taube Danielsen
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2024/07/25
[Freesurfer] ssistance needed: Aligning existing FreeSurfer segmentation with new T1 image
Owusu-Ansah, Maame
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2024/07/25
[Freesurfer] Assistance needed: Aligning existing FreeSurfer segmentation with new T1 image
Owusu-Ansah, Maame
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2024/07/25
[Freesurfer] Interpreting LME results with multi-row contrasts
Dan Levitas
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2024/07/23
Re: [Freesurfer] Issues for longitudinal pipeline-based process
Ahmet Kaya
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2024/07/23
[Freesurfer] Issues for longitudinal pipeline-based process
Yoonho Hwang
-
2024/07/23
[Freesurfer] FreeSurfer Question
Selena Gangaram
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2024/07/23
[Freesurfer] FreeSurfer in fmriprep
Tengwen Fan
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2024/07/22
Re: [Freesurfer] Longitudinal analyses using Repeated measures anova
Josefine Tingdal Taube Danielsen
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2024/07/22
Re: [Freesurfer] Scalp mask
Douglas N. Greve
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2024/07/22
Re: [Freesurfer] Longitudinal analyses using Repeated measures anova
Douglas N. Greve
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2024/07/22
Re: [Freesurfer] Negative voxel ranges
Douglas N. Greve
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2024/07/22
Re: [Freesurfer] Very large segmentation errors with recon-all
Douglas N. Greve
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2024/07/22
[Freesurfer] ConcatenateSubregionsResults
Zeng, Victor (BIDMC - Keshavan - Psychiatry)
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2024/07/18
[Freesurfer] Open question to everyone about publicly available MRI datasets
Zeng, Victor (BIDMC - Keshavan - Psychiatry)
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2024/07/17
Re: [Freesurfer] (no subject)
Huang, Yujing
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2024/07/17
[Freesurfer] Steps for Correcting Dura Using Multi-echo MPRAGE
KEITH JONES
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2024/07/17
Re: [Freesurfer] mri_gtmpvc RBV - cannot find file from a custom subject directory
Sneha Pandya
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2024/07/17
Re: [Freesurfer] (no subject)
李梦君
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2024/07/16
[Freesurfer] Scalp mask
Francesco Lomi
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2024/07/15
Re: [Freesurfer] (no subject)
Huang, Yujing
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2024/07/15
[Freesurfer] Negative voxel ranges
ERNEST KISSI
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2024/07/15
[Freesurfer] (no subject)
李梦君
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2024/07/15
Re: [Freesurfer] Very large segmentation errors with recon-all
Tornabene, Danilo
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2024/07/14
Re: [Freesurfer] Maps from fsLR system (32, 492 vertices) to fsaverage5
Douglas N. Greve
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2024/07/14
Re: [Freesurfer] Very large segmentation errors with recon-all
Douglas N. Greve
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2024/07/12
Re: [Freesurfer] Functional connectivity: sig.nii.gz values seem off
Douglas N. Greve
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2024/07/12
Re: [Freesurfer] Doing math on mgz file
Douglas N. Greve
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2024/07/12
Re: [Freesurfer] Licence for using Freesurfer-generated images in a book?
Douglas N. Greve
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2024/07/12
Re: [Freesurfer] mri_gtmpvc RBV - cannot find file from a custom subject directory
Douglas N. Greve
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2024/07/11
[Freesurfer] mri_gtmpvc RBV - cannot find file from a custom subject directory
Sneha Pandya
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2024/07/11
Re: [Freesurfer] Longitudinal analyses using Repeated measures anova
Josefine Tingdal Taube Danielsen
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2024/07/10
[Freesurfer] Maps from fsLR system (32, 492 vertices) to fsaverage5
Stefano Delli Pizzi
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2024/07/10
Re: [Freesurfer] Longitudinal Analysis Error
Huang, Yujing