the
package to experimental shortly. I brought various minor
changes to refresh standards compliance and normalize patch
headers timestamps, but nothing too interesting to spend time
on.
Thank you for your contribution!
Have a nice day, :)
--
.''`. Étienne Mollier
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will be at
the DebCamp in the upcoming week and dedicate my time to Debian
activities.
Have a nice day, :)
--
.''`. Étienne Mollier
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`. `' sent from /dev/pts/1, please excuse my verbosity
`-on air: Tiger Moth Tales - Story Tellers
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be possible to verify whether bitseq seems
capable of running on 32-bit systems; I've had a peek at how
things are doing, but let you discover the results by yourself.
;)
Have a nice day, :)
--
.''`. Étienne Mollier
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Hi Harish,
Étienne Mollier, on 2025-06-12:
> harish chavre, on 2025-06-12:
> > Should I go ahead and try this approach that Nilesh
> > suggested? I can generate the files on amd64, add them to
> > debian/tests/data, and include a short note in
> > debian/tests/READM
rom 32-bit architectures
would, again, become justified.
Have a nice day, :)
--
.''`. Étienne Mollier
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Hi Ananthu,
Ananthu C V, on 2025-06-12:
>On 11 June 2025 20:59:00 UTC, "Étienne Mollier" wrote:
>>Once the skip is implemented, you should see autopkgtest skip on
>>i386, while amd64 runs should still pass:
[…]
>>If we're lucky, this may be sufficient to
hare:
$ mmdebstrap --variant=buildd --arch="$arch" --skip=output/mknod
unstable ~/.cache/sbuild/unstable-i386.tar.xz
For even more performance bumps, I also have a relay running
locally to cache Debian packages downloaded from my nearest
mirror. If you're interested, you can
metaphlan[1] properly, then this is
not going to be a blocker for the migration. There is just 14
days to go before migration, provided that no serious issues are
identified by then. Things are looking good!
[1]: https://qa.debian.org/excuses.php?package=metaphlan
> Thank you again for your
all changes
may be welcome during the time of the freeze in which we are at
the moment.
I have further comments below.
> On Wednesday, 21 May, 2025 at 02:09:05 am IST, Étienne Mollier
> wrote:
>> About the d/copyright file, the paragraph you added clarifies
>> the origin
, hopefully not too much.
[5]: https://github.com/biobakery/MetaPhlAn/pulls
In hope this helps,
Have a nice day, :)
--
.''`. Étienne Mollier
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tical bugs. That being
said, all outstanding issues will still benefit being moved
forward. Don't get yourself too distracted by general triage if
your main topic is autopkgtest though. ;)
Have a nice day, :)
--
.''`. Étienne Mollier
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time to
time. You may note some bugs affect autopkgtest regression and
may be more on-topic than others. ;)
[13]: https://www.debian.org/Bugs/
[14]:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?maint=debian-med-packag...@lists.alioth.debian.org
> > I am looking forward to working with y
t be sufficient to
make sure that the program has no obvious issues.
Have a nice day, :)
--
.''`. Étienne Mollier
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n upstream wiki page[1]
(parseAlignment, estimateExpression, getVariance, etc). Once
all instructions of the wiki are codified and verified working
properly, I think your autopkgtest will be ready for upload.
[1]: https://github.com/BitSeq/BitSeq/wiki/Basic-usage
Have a nice day, :)
--
.'
ning them, then it can be reconsidered. In
extreme situations, long run time may cause debci runners to
timeout, in which case it will become necessary to indeed take
shortcuts in the test suite, but this is the exception, not the
rule.
Does this answer your questions?
Have a nice day, :)
-
zeep
Have a nice day, :)
--
.''`. Étienne Mollier
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ddress to trigger discussions when needed:
Author: root
You would probably prefer reading your real email address here.
And that is all for now. I hope I was not too overwhelming with
my review. Again, Thanks for your work in attempting to improve
the quality of the bitseq package!
to upcoming Debian trixie!
Have a nice day, :)
--
.''`. Étienne Mollier
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Hi Emmanuel,
Étienne Mollier, on 2025-03-25:
> I reviewed your changes to camitk and am preparing them for
> sponsored upload.
Now they're actually uploaded.
Thank you for your contribution!
Have a nice day, :)
--
.''`. Étienne Mollier
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s a leaf package, so there
is no strict need yet to motivate an unblock request with an
important or more severe bug.
Have a nice day, :)
--
.''`. Étienne Mollier
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`. `' sent from /dev/pts/3, please excus
e in trixie in a couple of days.
Thank you for having taken the time to prepare your software
while also accounting for intégration in the operating system!
Have a nice day, :)
--
.''`. Étienne Mollier
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`.
he
> documentation, the paths to the fonts and scripts would be incorrect.
>
> I've pushed a new version (6.1.1-1) to salsa.
Uploaded with a minor change to the d/copyright file, as there
was still a cmake file with the BSD-2-clause terms and the
copyright file was slightly malforme
ed[1], so Thanks for the declaration. :)
[1]: https://wiki.debian.org/SummerOfCode2025/Projects
> I would try to assist as well if you happen to need my help.
That would be helpful, especially if timezone shift does not
play well with students. Thank you
Have a nice day, :)
--
.'&
as co-mentor in the past, I don't have in mind
> any project for this year, but if you have one I'd happy to co-mentor
> :-D
Cool, that could be helpful to complement timezones coverage if
we are a few ones.
Have a nice day, :)
--
.''`. Étienne Mollier
: :'
entation, and to witness creative new approaches
to autopkgtest scripts.
[1]:
https://salsa.debian.org/med-team/community/helper-scripts/-/blob/master/debian-med-tests.txt?ref_type=heads
Have a good evening, :)
--
.''`. Étienne Mollier
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> student for our project?
… I'm also worried about creating a precedent for the Debian Med
Team for not stepping up. So, I agree to serve as a co-mentor.
I will try what I can in the frame of my calendar and energy to
help students achieve our project proposal.
In hope this helps,
--
or your work on the libzeep, both as the
packager and upstream developer!
Have a nice day, :)
--
.''`. Étienne Mollier
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&package=python-pysam
Thanks should go to upstream developpers for the work in
aligning with the newer developments in the htslib, without
mentionning all the novelties. Also, thanks Michael Crusoe for
the hand with samtools issue #1087456.
Have a nice day, :)
--
.''`. Étienne
Hi again Maarten,
Étienne Mollier, on 2025-02-01:
> About this issue:
>> Oh, and piuparts complains about something. Perhaps one with more knowledge
>> is willing to have a look at salsa to see what is wrong here?
>>
>> https://salsa.debian.org/med-team/libpdb-redo
&
inux-gnu/libpdb-redo.so.3.2.1 upon upgrade.
In hope this helps,
--
.''`. Étienne Mollier
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Hi Andreas,
Andreas Tille, on 2025-01-14:
> Am Tue, Jan 14, 2025 at 08:47:14PM +0100 schrieb Étienne Mollier:
> > Assuming you're short on cycles for uploads right now, I can
> > also finalize sift once blimps is in the archive and will try to
> > do that tomorrow, if no
Étienne Mollier, on 2025-01-14:
> Andreas Tille, on 2025-01-14:
> > Am Fri, Jan 10, 2025 at 09:56:13PM +0100 schrieb Étienne Mollier:
> > > The issue stems from a lack of header protection stanza in
> > > /usr/include/blimps/protomat.h as shipped by the libblimps3-dev
&
Hi Andreas,
Andreas Tille, on 2025-01-14:
> Am Fri, Jan 10, 2025 at 09:56:13PM +0100 schrieb Étienne Mollier:
> > The issue stems from a lack of header protection stanza in
> > /usr/include/blimps/protomat.h as shipped by the libblimps3-dev
> > package. I noted that there we
#endif
This should protect multiple redefinitions caused by multiple
inclusions of the header file.
Have a nice day, :)
--
.''`. Étienne Mollier
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`. `' sent from /dev/pts/1, please excuse my verbosity
`-on
s and Happy New Year, :)
--
.''`. Étienne Mollier
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** Finally upload deppdiff.
Acknowledged, I add deepdiff to the count as I won't see it
appear in Alioth lists.
Have a nice day, :)
--
.''`. Étienne Mollier
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`. `' sent from /dev/pts/1, please excuse
Hi all,
Andreas Tille, on 2024-12-19:
> Am Wed, Dec 18, 2024 at 07:04:14PM +0100 schrieb Étienne Mollier:
> > The list was still manually deduced from alioth-lists[1],
> > although regexes greatly helped. If your bugs are missing,
> > don't hesitate to advertise them
eam commits.
In the meantime, it may be useful to follow up with other
components upgrades into Debian experimental, this would
facilitate further testing from various parties.
Have a nice day, :)
--
.''`. Étienne Mollier
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helped. If your bugs are missing,
don't hesitate to advertise them and add them to the count.
[1]:
https://alioth-lists.debian.net/pipermail/debian-med-packaging/2024-December/date.html
Have a nice day, :)
--
.''`. Étienne Mollier
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ists[1],
and notably had to have a peek at email timestamps to get the
bug closures dates. Hopefully I haven't messed up too much the
lists.
[1]:
https://alioth-lists.debian.net/pipermail/debian-med-packaging/2024-December/date.html
Have a nice day, :)
--
.''`. Étienne Mollier
having tackled these
items!
Have a nice Sunday of the Advent, :)
--
.''`. Étienne Mollier
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an.org/qa.debian.org/FTBFS/DoubleBuild
> Any contribution to increase the quality of our packages is really
> welcome. As promised earlier I will join this effort despite my
> DPL-"vacation" from Debian Med team.
Have a nice Advent period, :)
--
.''`. Étienne Moll
and have not witnessed any
visible problems with this version. Binary packages will be
available for installation in experimental once compiled by the
buildd, probably at some point tomorrow.
Have a nice day, :)
--
.''`. Étienne Mollier
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Good day,
Étienne Mollier, on 2024-11-12:
> The htslib ecosystem has been available for some time in newer
> upstream version 1.21, but the Debian package in unstable is
> still in version 1.20. I am preparing an upload of htslib 1.21
> to experimental to get a picture of how things
ave a nice day, :)
--
.''`. Étienne Mollier
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Hi Maarten,
Maarten L. Hekkelman, on 2024-10-31:
> Op 30-10-2024 om 20:42 schreef Étienne Mollier:
> > despite the incomplete subset, it allows the
> > test to pass, allowing the python-biopython build to go through.
> > I should be able to upload a fix shortly. 🙂
> If
s
> and nucleic acids is a bit too limited to be useful.
I understand how problematic it is to determine a useful subset,
and am afraid I don't believe to have any good idea. For all I
can tell, in its present shape, the mini-ccd.cif already allows
for basic functional testing.
Have a nice da
ip the test, as internet access at build time is not an
option, but it means missing out on other genuine issues
affecting libcifpp support in python-biopython. The thing is,
I'm not sure yet whether the test failure results from issues in
python-biopython or libcifpp-data.
Have a nice day, :)
Hi Karsten,
Karsten Hilbert, on 2024-09-26:
> Am Wed, Sep 25, 2024 at 10:06:46PM +0200 schrieb Étienne Mollier:
> > I triggered an upload of gnumed-client 1.8.19. It should make
> > its way in unstable by tomorrow.
>
> Many thanks !
>
> It installed fine on my te
Hi Karsten,
Étienne Mollier, on 2024-09-25:
> Great, thank you for the clarifications! I'll focus on the
> client,
I triggered an upload of gnumed-client 1.8.19. It should make
its way in unstable by tomorrow.
Have a good night, :)
--
.''`. Étienne Mollier
: :&#x
client is needed.
>
> I'll upload 22.29 for good measure ;-)
>
> Nevertheless, for the record: any 1.8.19 client will work
> just fine with a 22.28 database, old or new...
Great, thank you for the clarifications! I'll focus on the
client, and gnumed-server 22.29 will
en less confusing and would have had a chance to be
caught by our uscan tool.)
Have a nice day, :)
--
.''`. Étienne Mollier
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`-
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ic
> bug, but, anyway this version is better than the currently in the archive and
> so this should be uploaded :)
The "Mac" bit confuses me. You did work on the package from
within at Debian sid system, virtual machine, or at least some
form of container or chroot, rig
ensing issues.
Have a nice day, :)
--
.''`. Étienne Mollier
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`. `' sent from /dev/pts/5, please excuse my verbosity
`-on air: The Ocean - Holocene
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e git repository[0] is up to date. Salsa
CI[1] gives an idea of the test items that are failing at the
moment.
[0]: https://salsa.debian.org/med-team/python-pyani
[1]: https://salsa.debian.org/med-team/python-pyani/-/jobs/6176496
Have a nice day, :)
--
.''`. Étienne Mollier
: :' :
d to diff again and everything is identical. Only diff is in dbgsym.
> Seems like some embedded buildpath issue.
If people want to tackle build reproducibility issues, the pymol
repository on salsa is up to date, accounting for today's
upload.
Have a nice day, :)
--
.''`.
Hi Andreas,
Andreas Tille, on 2024-07-20:
> Hi Étienne,
>
> Am Sat, Jul 20, 2024 at 12:16:19AM +0200 schrieb Étienne Mollier:
> > Thanks, I was going to proceed to the upload, but it occurred to
> > me that pymol is a debichem team package, team which I am not
> >
salsa access to at least be able to push a
tag and pinged the alioth list. I thought it would be more
appropriate that I join before begining to sponsor uploads and
push tags.
Have a nice day, :)
--
.''`. Étienne Mollier
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plicated to travel in the upcoming
weeks, but if you need people to sign your new key, you can have
a look at key signing offers[3] in your neighborhood.
[3]: https://wiki.debian.org/Keysigning/Offers
Have a nice day, :)
--
.''`. Étienne Mollier
: :' : pgp: 8f91 b227
anks for considering. Even if i386
were to not be supported upstream anymore, this particular issue
could be symptomatic of an algorithmic stability issues, that
might be of interest to tackle upstream.
Have a nice day, :)
--
.''`. Étienne Mollier
: :' : pgp: 8f91 b227 c7
Hi again,
Étienne Mollier, on 2024-07-10:
> Full log would probably be better suited in your issue tracker
> than in a mailing list. Let me know if you need it. I tried to
> trip Salsa CI so it produces an independent build and a build
> log to point to, but it doesn't loo
Class' because
'Compiler.Enum.dmenumFromThenTo_3345' is neither declared nor imported.
==
The test 37 is affected by many more cases of "Can't add alias":
FAIL! (116 unexpe
al, and I confirm that the
build went through without regressions.
Have a nice evening, :)
--
.''`. Étienne Mollier
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`. `' sent from /dev/pts/1, please excuse my verbosity
`-on air: Colosseum II - Rivers
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Hi,
Andreas Tille, on 2024-05-31:
> Hi,
>
> thank you for all your work
You're welcome! :)
> Am Thu, May 30, 2024 at 09:06:11PM +0200 schrieb Étienne Mollier:
> > Erm, things didn't go according to the plan. Thankfully Salsa
> > caught properly my failure to
Étienne Mollier, on 2024-05-30:
> Some of the htslib packages were already available in their 1.20
> version counterpart, so I tried to finish the migration
> yesterday as I had some time. I seem to have fumbled a bit the
> samtools upload by forgetting to declare it requires libht
too much to worry about.
If everything goes according to the plan, the htslib 1.20
ecosystem should be consistent in testing in a couple of days.
Have a nice day, :)
--
.''`. Étienne Mollier
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`. `'
hed
my changes on salsa and am preparing an experimental upload.
Have a nice day, :)
--
.''`. Étienne Mollier
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`. `' sent from /dev/pts/1, please excuse my verbosity
`-on air: Virtual Symmetry -
Hi Aurelien,
Aurelien Jarno, on 2024-04-25:
> > Étienne Mollier, on 2024-04-23:
> > > r-cran-hunspell looks also affected on armel:
> > >
> > > r-cran-hunspell (6d 7h 31m, arm-arm-01)
> > > python-biopython (6d 5h 16m, arm-arm-03)
> > >
&g
Hi Wanna Build Team,
Just in case this flown below the radar in the past week, you
might want to be aware of the below packages stuck in Building
state on various arm-arm-* buildd:
Étienne Mollier, on 2024-04-23:
> Andrius Merkys, on 2024-04-23:
> > Five days ago I have uploaded e
m-03)
also pyresample on arm64:
emboss (6d 7h 49m, arm-arm-01)
pyresample (6d 7h 9m, arm-arm-04)
and on armhf:
pyresample (6d 7h 10m, arm-arm-01)
none of which look to need that long to build.
It could be that something went off with some Arm (ltd) runners.
In hope t
comment-2007544485
In hope this clarifies things,
--
.''`. Étienne Mollier
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ommends test.
Have a good evening, :)
--
.''`. Étienne Mollier
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`. `' sent from /dev/pts/1, please excuse my verbosity
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Étienne Mollier, on 2024-03-11:
> I think it may be skipped for now by
> creating a debian/tests/pkg-perl/SKIP file containing:
>
> runtime-deps-and-recommends
The change turns out to be much more involved than I initially
thought: we need to account for the build dependencies as
ges no matter what, I think it may be skipped for now by
creating a debian/tests/pkg-perl/SKIP file containing:
runtime-deps-and-recommends
I can do that for you if you are busy on other fronts.
[1]: https://perl-team.pages.debian.net/autopkgtest.html
Have a nice evening, :)
--
.''
pybuild-autopkgtest(1) manual[2] for further details.
[1]:
https://salsa.debian.org/python-team/packages/python-parsl/-/blob/debian/master/debian/rules?ref_type=heads
[2]:
https://manpages.debian.org/bookworm/dh-python/pybuild-autopkgtest.1.en.html
Have a nice day, :)
--
.''`. Étie
Package: wnpp
Severity: wishlist
Owner: Étienne Mollier
X-Debbugs-Cc: debian-de...@lists.debian.org
X-Debbugs-Cc: debian-med@lists.debian.org
* Package name: python-trx-python
Version : 0.2.9
Upstream Contact: Francois Rheault
* URL : https://github.com/tee-ar-ex/trx
Hi all,
Étienne Mollier, on 2023-12-30:
> Andreas Tille, on 2023-12-30:
> > I've fixed routine-update to not remove that field. I do not
> > have more time now - so if you feel like fixing libsbml that
> > would be great.
>
> Thank you for the modification, I
Hi Andreas,
Andreas Tille, on 2023-12-30:
> Am Sat, Dec 30, 2023 at 04:28:39PM +0100 schrieb Étienne Mollier:
> >
> > autopkgtest-pkg-python can be requested to use only one python3
> > version by specifying the X-Python3-Version field in d/control,
> > first paragra
week if I happen to have blockers.
> I will probably not be able to join in the water tower on the 16th, but no
> worry about this.
Have a good night, :)
--
.''`. Étienne Mollier
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n python3 version upgrades.
Have a nice day, :)
--
.''`. Étienne Mollier
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`. `' sent from /dev/pts/5, please excuse my verbosity
`-on air: Focus - Focus [Instrumental]
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ght you
already were.
> > I hope everyone is enjoying their holidays. I wish
> > you all a Happy New Year!
>
> Same to you
Happy new year everyone, :)
--
.''`. Étienne Mollier
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`. `' sent
remaining of the year
Have a nice day, :)
--
.''`. Étienne Mollier
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ckage yesterday, thank you!
Have a good evening, :)
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.''`. Étienne Mollier
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, :)
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.''`. Étienne Mollier
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Hi all,
I closed #1048044, yet another case of double source build
failure affecting the legacy muscle3 package. I will probably
busy myself with other things to take a bit of rest instead of
squashing further bugs for today.
Have a nice Sunday of the Advent, :)
--
.''`. Étien
avoid breaking pysurfer's autopkgtest after a
recent version bump of python-traitsui.
Have a nice day, :)
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.''`. Étienne Mollier
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`. `' sent from /dev/pts/2, please excuse my verbosity
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Étienne Mollier, on 2023-12-15:
> Hi all,
>
> For today's entry:
Oh, I forgot to mention that I bumped the htslib ecosystem to
version 1.19, except for the htslib itself which I uploaded to
experimental for a couple of reasons:
1. I'm unsettled about a "normal
fixes until the next
pynn upstream version, which should not be affected anymore,
can make it to the archive.
Have a nice day, :)
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.''`. Étienne Mollier
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the salsa repository. I could finish the package upgrade and
upload.
[1]: https://docs.python.org/3/whatsnew/3.12.html
I also painted a target for other volunteers, see #1058705.
Have a good night, :)
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.''`. Étienne Mollier
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Étienne Mollier, on 2023-12-13:
> I sorted the release critical bug #1058394, originally affecting
> augur, as it caused it to fail to build from source. The issue
> was stemming from pyfastx, which needs rebuild so its library is
> exposed to python3.12 scripts.
In addition for
Debian Bug Tracking System
-
Date: Wed, 13 Dec 2023 10:51:02 +
From: Debian Bug Tracking System
To: Étienne Mollier
Subject: Bug#1058394: marked as done (augur: FTBFS: dh_auto_test: error:
pybuild --test --test-pytest -i
python{version} -p "3.12 3.11" returned exit
Hi Emmanuel,
> On 05/12/2023 00:24, Étienne Mollier wrote:
> > Still counting for December 4th if counting from UTC+, I
> > fixed two minor cases of double source build failures for today.
> > #1047043 notably affected insighttoolkit5 which is rather heavy
> > to
RC bugs caused by gcc version
bumps, causing in turn shuffling of leaked symbols in the table.
Bugs #1046793, #1047333 and #1049134 were other boring cases of
failures to build source after successful build of the package.
Have a nice day, :)
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.''`. Étienne Mollier
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, :)
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.''`. Étienne Mollier
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same issue observed on
Ubuntu runners, worked around by skipping the command hogging
the memory.
Have a nice day, :)
Étienne.
- Forwarded message from Debian Bug Tracking System
-
Date: Mon, 04 Dec 2023 16:30:03 +
From: Debian Bug Tracking System
To: Étienne Mollier
Subject: Bug
optimizations, but this is sometimes near impossible to
acheive, e.g. in the case affecting spades, due to the probable
compiler bug.
Have a nice Sunday, :)
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.''`. Étienne Mollier
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Hi Andreas,
Andreas Tille, on 2023-12-03:
> Am Sun, Dec 03, 2023 at 11:55:05AM +0100 schrieb Étienne Mollier:
> > Pierre Gruet, on 2023-12-03:
> > > Fixing minor bugs #1043696, #1045612, #1046315, #1046647, #1046802,
> > > #1046809, #1047000, #1048408, #1049745. Not
panel and
sort the low hanging fruits. On my end I just sorted #1040588,
which is also more or less an easy bug in the same spirit.
Have a nice Sunday of the Advent, :)
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.''`. Étienne Mollier
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`. `' sent f
ee.lintian-overrides: new.
Override the unrecognized diversion on the udev rule.
-- Étienne Mollier Fri, 24 Nov 2023 16:34:30 +0100
Today's upload migrated the package to unstable. Some may have
noticed yesterday's message from Helmut about pausing usr-merge
moves (I didn&#x
Hi,
Andreas Tille, on 2023-11-07:
> Am Mon, Nov 06, 2023 at 10:30:04PM +0100 schrieb Étienne Mollier:
> > There may be turbulences in this package ecosystem if I badly
> > anticipate corner issues, but nothing outstanding stood out in
> > the past two months, so time for
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