ume space?
>
> Thanks,
>
> Christopher
>
>
>
> -Ursprüngliche Nachricht-
> Von: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Douglas N Greve
> Gesendet: Donnerstag, 2. Juli 2015 14:49
> An: freesurfe
on the surface?
> Thanks
> Yuval
>
>
>
>
> Dr .Harpaz
>
> BIU MEG lab <http://faculty.biu.ac.il/%7Egoldsa/index.html>
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.m
gh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/
S_Final/SURF/rh.white.mgh
>
> ERROR: you must use '--surface subject hemi' with surface data
>
> Any suggestion would be greatly appreciated.
> Thanks a lot.
> Pablo
>
>
> ___________
> Freesurfer mailing list
> Freesurfer@nm
hange the y.mgh to any of the outputs of the
> > > mris_preproc (lh.white.mgh, lh.volume.mgh, lh.thickness.mgh, etc),
> and
> > > it says:
> > >
> > > Creating output directory g3v0
> > >
> > > Loading y from /Volumes/NEW_VOLUME/Familial_FS_Final/S
ntains patient information, please contact
>>>>> the Partners Compliance HelpLine at
>>>>> http://www.partners.org/complianceline . If the e-mail was sent to
>>>>> you in error but does not contain patient information, please contact the
>>>>>
ompletely wrong oriented.
>
> So that’s were I am stuck. Back to your question - I guess I need the
> voxel-to-RAS matrix to have FS-output in the original real world
> coordinates to enable direct comparisons and then guidance on how to
> calculate the image translations with FS (on a lar
-0.0324 -0.0613 -0.997595.8613
> -0.9760 0.0020 0.0331 136.3322
> 0. -0.9746 0.062894.6727
> 0. 0. 0. 1.
>
> voxel-to-ras determinant -0.953674
>
> ras to voxel transform:
> -0.0340 -1.0234 0. 142.78
alr file '/tmp/tmp5793760.nii'?
>
>
> We are running this on CentOS. Has anyone else run into this problem?
> We have tried the same command with the tutorial data and it does
> work, but we're having a hard time pinning down what we're doing wrong.
>
>
or in ==> flac_customize at 121
> [par partype] = fast_ldpar4(parpath);
>
> Error in ==> fast_selxavg3 at 115
> flac = flac_customize(flac);
>
> Error in ==> sxa3 at 30
> fast_selxavg3;
>
>
> Thank you so much.
>
> Best,
> J
this file and how I can generate it?
>
> Thanks for your help!
>
> Anais
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.h
c.mcdat but not these? We've
> never run our commands using -per-session before.
>
> Thanks,
> Anais
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
> [
16mm). How does per-run vs.
> per-session motion calculation differ?
>
> Thanks for your advice!
> Anais
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
> [gr
esurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.e
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.ed
ch versions
> in-between processing data sets.
>
> I do have a macbook pro running v5.3, I will attempt to recon on
> this subject.
>
> But are there any other options on v5.1?
>
> Why is it that voxels in aparc+aseg.mgz can not just be filled in
> w
d may contain Protected
> Healthcare Information or other information of a sensitive nature. If
> you are not the intended recipient, be advised that any unauthorized
> use, disclosure, copying or the taking of any action in reliance on
> the contents of this information is strictly pro
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/
___
> Freesurfer mailing list
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.
gt; > transform ROI mask created by FSL to label.
> >
> > Furthmore, I'd like to be sure of the position of the ROI. How can I
> > visualize it to be sure that the seed of my FS-FAST analysis is
> > effectively the my ROI_MASK?
> >
> > I hope i
00 1. NULL
> 245.15.000 1. evt1
> 250.07.500 1. NULL
> 257.500055.000 1. evt5
> 262.50000 10.000 1. NULL
> 272.500025.000 1. evt2
> 277.50000
ge/surf/lh.white): could not
> open file
> Permission denied
> mri_glmfit: could not read surface
> /home/anup/Desktop/QDEC/fsaverage/surf/lh.white
> Permission denied
>
>
> Please please tell me wher am I going wrong, I am doing the analysis
> on my own and tryinng really h
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--
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/Bu
nii.gz
>
> Any ideas why the registration is off?
>
> Tracy
>
>
>
> ___
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
surfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Monday, June 29, 2015 6:38 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] help on mris_preproc
>
> Hi David, did you resolve this?
> doug
>
> On 06/12/2015 04:56 PM, David C. Zhu
t;>> ___
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard
ge lhrh -min305 -fwhm 5 -per* |& tee fordoug.log
>
> I get:
> preproc-sess: No match.
>
> Thanks,
> Keji
>
>
>> On Jul 22, 2015, at 3:37 PM, Douglas N Greve
>> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>>
>> *
>> Can you run the fol
can you just send the log and not put it into a doc file?
On 07/22/2015 04:46 PM, Morenikeji Adebayo wrote:
> No problem! Here you go.
>
>
>
>> On Jul 22, 2015, at 4:30 PM, Douglas N Greve
>> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>>
>> Sorry, there s
Yes, but you have a typo -min305 instead of -mni305
On 07/22/2015 05:30 PM, Morenikeji Adebayo wrote:
> I sure can. Hopefully. Is the what you need?
>
>
>
>
>> On Jul 22, 2015, at 5:01 PM, Douglas N Greve
>> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>>
&
o lh.transversetemp_1001.nii
>
>
>
> Best regard
> s
>
> Amirhossein Manzouri
>
>
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/
uggestions how to do it? I do appreciate any
> help!
>
> Meiling
>
>
>
>
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
rg/complianceline . If the e-mail was sent to you in
>> error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>>
>
> ___
> Freesurfer mailing l
don't understand
> what it happened.
> How can I use these patients data?
>
> Thank you.
>
> Jung Mi
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailma
_____
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bug
t; $FREESURFER_HOME/average/mni152.register.dat --temp
>>> /autofs/cluster/maury/users/gcoombs/College_Risk/fcMRI/N12Trio_avg152T1.nii.gz
>>>
>>> Is there a step that I am missing? This is for an amygdala functional ROI
>>> that was created in tkmedit and saved
ds,
> Amirhossein Manzouri
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.ha
mount of smoothing
> overestimate the difference between groups?
>
> Eric
>
>
>
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--
Douglas N. Greve,
gt;
> ___________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 61
this point is hard for me. Could you explain it deeply?
>
> Thanks,
>
>
> Stefano
>
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
plicable law. Any
> unauthorized review, use, disclosure, or distribution is prohibited. If you
> have received this email in error please notify the sender by return email
> and delete the original message. Please note, the recipient should check this
> email and any attachments f
so that it uses this file, or is there a way to
> generate fmcpr.sm5?
>
> Thanks for your help,
> Anais
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurf
tive -timewindow
> 20 -TER 2 -nconditions 9 -gammafit 2.25 1.25 -refeventdur 2 -fwhm 5 -per-run
>
> Thanks,
> Anais
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N
gt; echo anadir = $anadir | tee -a $LF
> echo anadir =
> /autofs/cluster/roffman/users/Stable5_PerRun/GDDA001/bold/SIRP_LoadRegression_Stable5_072915
> tee -a
> /autofs/cluster/roffman/users/Stable5_PerRun/log/selxavg3-sess-bold-SIRP_LoadRegression_Stable5_072915-150730125217.log
> anadir =
> /autofs/cluster
lysis from that point, or would we need
> to do something more complicated?
>
> Many thanks,
> -Nate
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/fr
ou in error
> and the e-mail
> contains patient information, please contact the Partners
> Compliance HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent
> to you in error
> but does not contain patient informatio
sers/Stable5_PerRun/GDDA098/bold/SIRP_LoadRegression_Stable5_050514/Xtmp.mat
> XCond = 35.9364 (normalized)
> Computing compensation for resdual AR1 bias
> 1 -0.5 -0.507451(t=0.033876)
> 2 -0.25 -0.264(t=0.081305)
> 3 0 -0.0235997(t=0.100205)
>
recipient, please immediately notify us by return
> email, and delete this message from your computer.
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurf
SG
>
> SUBJECTS_DIR : /Volumes/NEW_VOLUME/GBS
>
> Parsing the .stats files
>
> ERROR: The stats file /Volumes/NEW_VOLUME/GBS/117AS/stats/wmparc.stats
> is not found or is too small to be a valid statsfile
>
> Use --skip flag to automatically skip bad stats files
>
&
nks in advance for your response,
> Rodrigo
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724
erson to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> bu
, so we
> would like to analyze the contralateral one.
>
> Thank you for your help in advance,
>
>
> Andrea
>
>
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.ed
; Wating for your response.
>
> With personal regards.
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
n=5) and control (n=8).
> Is it possible to compare ?
>
> Thanks and regards
> Dibashree
> AIIMS, New Delhi
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/li
or A < PC be
> -1 1 0 0 etc
>
> Many thanks,
>
> Lena
>
>
>
> ___
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.
dRegression_Stable5_050514/Xtmp.mat
> XCond = 35.9364 (normalized)
> Computing compensation for resdual AR1 bias
> 1 -0.5 -0.507451(t=0.046548)
> 2 -0.25 -0.264(t=0.105696)
> 3 0 -0.0235997(t=0.137308)
> 4 0.25 0.211292(t=0.189719)
> 5 0.5 0.434363(t=0.2
> 620CB 624PW 635AG 650RCd 655PMCE 660AQ 668JG 673JK 699MOC 701TG
> 703MHc
> > > 711SJ 718PJ 732PS 736HODc 741JT 750MD 758JOLT 762MJ 777MCb 783DMCM
> > > 792GF 807YG 808MM 818NL 824MM 853MR 864AF 868ALF 872DCc 888MOB 896EF
> > > 905PG_5 914JB 917JH
be smoothed at 5 and should
> be the input for analysis, correct?
>
> Thanks,
> Anais
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
> [gr...@nmr.mgh.harvard.e
--C
>
> /NAS/dumbo/matthieu/ASL_Epilepsy/FS_5.3//SurfaceAnalysis_mri_glmfit/V4/DODS/right-left.duration.slope.mtx
> --C
>
> /NAS/dumbo/matthieu/ASL_Epilepsy/FS_5.3//SurfaceAnalysis_mri_glmfit/V4/DODS/right-left.intercept.mtx
> --surf fsaverage lh --cortex --glmdir
>
> /NA
trol-left.intercept.mtx
> > --C
> >
>
> /NAS/dumbo/matthieu/ASL_Epilepsy/FS_5.3//SurfaceAnalysis_mri_glmfit/V4/DODS/control-right.age.slope.mtx
> > --C
> >
>
> /NAS/dumbo/matthieu/ASL_Epilepsy/FS_5.3//SurfaceAnalysis_mri_glmfit/
rs.org/cvpn/aHR0cHM6Ly9wcm94eS1vd2EucGFydG5lcnMub3Jn/owa/redir.aspx?C=8A9OJCUaPkOLxUmmjc0_cF-xdjAP2NEI4aEbq2JpVjitXhs_QYjcIRXVbcEtTXWjym0XzqsaDNI.&URL=mailto%3amarco%40nmr.mgh.harvard.edu>
>
>
> ___
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> Freesurfer@nmr.mgh.harv
wing that this factor is null for
> controls ?
>
> Cheers,
>
> Matthieu
>
> Le 4 août 2015 22:22, "Douglas N Greve" <mailto:gr...@nmr.mgh.harvard.edu>> a écrit :
>
> The Epilepsy_Duration is the same for all MaleControl subjects. You
> can&#
le=aseg.stats --subjects CDPAD02WJD_recon CDPAD09HOH_recon
> CDPAD26LJC_recon CDPAD28_KEJ2419486 CDPcon02_recon CDPcon03_recon
> CDPcon04_recon CDPcon05_recon
>
> while executing
> "vtkTemp2 GenerateStatsDataTables"
>
>
>
> __
c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
> User: USER Machine: MACHINE Platform: Linux PlatformVersion:
> 2.6.32-431.20.3.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
>
> On Mon, Aug 3, 2015 at 12:03 PM Douglas N Greve
> mailto:gr...@nmr.mgh.harva
specifications in the command.
>
> Thanks,
> m
>
>
> ___
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr.
uch for your help.
>
> Xiaomin
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.
gt; Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://ga
>
> On Thu, Aug 6, 2015 at 9:28 AM Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> We don't have tools to explicitly change those strings. You can read
> them into matlab as Bruce suggests. You can also convert them to nifti
> and then back
ing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop:
ct the sender and properly dispose of the e-mail.
>
>
> ___________
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh
t; Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://ga
t; ___
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: s
ng the recon-all of 1000 subjects to MNI
> space.
>
> Since you appear to be working on an individual subject, the
> freesurfer estimate of the cortical ROIs is likely to be quite
> accurate. Why might you want to dilate them into CSF or white
> ma
l says:
> /Applications/freesurfer/bin/mri_probedicom: Permission denied.
> Any idea?
> Thanks,
> EIraqn
>
>
> On Monday, August 10, 2015 6:18 PM, Douglas N Greve
> wrote:
>
>
>
> Hi Eiran, can you download the following two binaries and rerun? First
> make a backup c
cluster --in merged_encode_Young_NEUT_hit_V_miss_n41.nii.gz
> --thmin 1.3 --minsizevox 5 --sign neg --sum
> adebayo_young_neut_p.05 —fsaverage
>
> How would I:
>
> 1) Specify the voxel size
> 2) Have the results output in MNI?
>
>
> Thanks,
> Keji
>
>
>> On Aug 10, 2015, at 11:32
On 08/10/2015 02:35 PM, Nate Vack wrote:
> On Fri, Aug 7, 2015 at 2:45 PM Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> On 08/07/2015 03:11 PM, Nate Vack wrote:
> > Thanks. Any other file types I should look for tags in?
> I think the sur
fer
> >
> >
> > The information in this e-mail is
> > intended only for the person to whom
> > it is
> >
>
> #
>
>
> # ClusterNo Max VtxMax Size(mm^2) TalX TalY TalZNVtxs
>
>13.332 83949 82219.39-29.4 -22.0 17.4 163842
>
>
>
>
> Are those TalX TalY TalZ the values I'm looking for?
>
>
> Many thanks for your time.
>
>
> Best Wishes,
>
, there is a procedure of talairach transformation. Were the
> outputs transformed into talairach space?
> Any help will be greatly appreciately!
> Best,
> Feng
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvar
gt; Any ideas on what to do?
> Thanks
> Chaz
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617
reg
>
> The output surface file is flipped - medial wall surface values on
> lateral wall and visa versa.
>
> Is there a way to register the files back from “$s”/xhemi/surf to
> “$s”/surf?
>
> Thanks,
> Sophie
>
>
>
>
>
>
>
>
> __
eproc only concatenates the files.
>
> Thank you for your help,
>
> Best, Silas
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Dougla
this e-mail is intended only for the person to whom it
> > > is addressed. If you believe this e-mail was sent to you in error and
> > > the e-mail contains patient information, please contact the Partners
> > > Compliance HelpLine at http://www.partners.org/complianceline . I
gz
> Loading
> /Volumes/projects/painimaging/Bishop/FreeSurfer_R01/Project/B113v1/rest/001/fmcpr.nii.gz
> Voxel Volume is 27 mm^3
> Generating list of segmentation ids
> Found 1 segmentations
> Computing statistics for each segmentation
> 0 1
Can you send the new qdec table file?
On 08/05/2015 04:05 AM, Clara Kühn wrote:
> no worries!
> sadly, though, deleting the empty line wasn't the answer to the problem :(
> Cheers, Clara
>
> - Ursprüngliche Mail -----
> Von: "Douglas N Greve"
> An: frees
ne at the end? I've attached that for
> you.
> Cheers, Clara
>
> - Ursprüngliche Mail -
> Von: "Douglas N Greve"
> An: freesurfer@nmr.mgh.harvard.edu
> Gesendet: Donnerstag, 13. August 2015 18:12:40
> Betreff: Re: [Freesurfer] cannot find qdec file
&g
> is addressed. If you believe this e-mail was sent to you in error and
> > > the e-mail contains patient information, please contact the Partners
> > > Compliance HelpLine at http://www.partners.org/complianceline . If
> the
> > > e-mail was s
il is intended only for the person to
>> whom it is
>> addressed. If you believe this e-mail was sent to you in error and
>> the e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/compli
gt;
> What files should be edited and what recons should be processed after edits
> to get a complete freesurfer data set.
>
> Thanks
>
> Joe
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https:
wrote:
> sorry, what was ?
>
>
> On Aug 25, 2015, at 3:18 PM, Douglas N Greve wrote:
>
>> wasn't this brought up on the list a few weeks back?
>>
>> On 08/25/2015 06:08 PM, fmri wrote:
>>> Dear Freesurfer experts,
>>>
>>> on aparc+ase
gt;> but does not contain patient information, please contact the sender and
>>> properly
>>> dispose of the e-mail.
>>>
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
&g
the threshold when specifying "--cache
>> threshold sign" to mri_glmfit-sim
>>>
>>> 4. What is the difference between two words(Area Threshold,
>>> CSD thresh)?
>> One is the cluster-pvalue and the other is the
>> cluster-f
ile that
> are excluded from the analysis)?
>
> Thanks a lot!!
>
> Sebastien
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesu
nfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harv
1): could not open file
>
> ERROR: loading aseg $SUBJ/mri/MRS_MASK.nii.gz.mgz
>
> Which is the error?
>
> Thanks
>
> Stefano
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://m
I am about to pick some cortical seeds for
> further analyses?
>
>
> Kind regards,
> Jacek Manko
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mai
sions with a high variance?
>
> Thanks!
>
> Best, Silas
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR
; ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs
d
> compare them.
>
> Thanks,
> Jonathan
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...
flag be removed?
>
> Thanks,
> Gabriella
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
> [gr...@nmr.mgh.harvard.edu]
> Sent: Tuesday, September 08, 2015 1:10
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