On 08/07/2015 03:11 PM, Nate Vack wrote: > Thanks. Any other file types I should look for tags in? I think the surfaces have the subject name imbedded in them. > > Out of curiosity, how do .mgz and nifti files differ? > mgz files have a lot more header info > Best, > -Nate > > On Thu, Aug 6, 2015 at 9:28 AM Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > We don't have tools to explicitly change those strings. You can read > them into matlab as Bruce suggests. You can also convert them to nifti > and then back to mgz. > > On 08/05/2015 05:07 PM, Nate Vack wrote: > > Thanks! > > > > One complication I'm seeing is that when I uncompress, say, an .mgz > > file, the old subject number is still embedded in some text near the > > end of the file*. Since we want to change these ID numbers for > > de-identification purposes, we'd need to change them there, too. > > > > Is there a way to either strip those things or edit them? > > > > Thanks! > > -Nate > > > > * For example: > > > > > > P/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/transforms/talairach.xfm > > UNKNOWN > > @AutoAlign 0.000000 0.000000 0.000000 0.000000 0.000000 > > 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 > > 0.000000 0.000000 0.000000 0.000000 0.000000 > > mri_convert > > /studies/STUDY/DATA/mri/processed/IDENTIFIER/anat/T1High_native1.nii > > > /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig/001.mgz > > ProgramVersion: $Name: stable5 $ TimeStamp: 2014/08/25-21:51:59-GMT > > BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_convert.c,v > > 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: USER Machine: > > MACHINE Platform: Linux PlatformVersion: > 2.6.32-431.20.3.el6.x86_64 > > CompilerName: GCC CompilerVersion: 40400 > > mri_convert > > > /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/rawavg.mgz > > /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig.mgz > > --conform ProgramVersion: $Name: stable5 $ TimeStamp: > > 2014/08/25-21:54:39-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: > > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > > User: USER Machine: MACHINE Platform: Linux PlatformVersion: > > 2.6.32-431.20.3.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 > > > > On Mon, Aug 3, 2015 at 12:03 PM Douglas N Greve > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: > > > > I think that should work without problem. > > > > On 08/03/2015 12:51 PM, Nate Vack wrote: > > > Hi all, > > > > > > We're looking to change the ID system we're using for some > > freesurfer > > > data. Will doing do be as simple as renaming our > single-subject data > > > directories and restarting analysis from that point, or > would we > > need > > > to do something more complicated? > > > > > > Many thanks, > > > -Nate > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> > > Phone Number: 617-724-2358 > > Fax: 617-726-7422 > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the > person to > > whom it is > > addressed. If you believe this e-mail was sent to you in > error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
