Yes, it is for 12dof. It is not hidden for any particular purpose (except maybe that I'm lazy). In general, I don't think it is a good idea to use 12 or 9 dof unless you have an explicit reason to.
On 08/04/2015 01:54 PM, Perea Camargo, Rodrigo Dennis wrote: > Hi all, > I am using a previous script to update a pipeline for pre-processing > diffusion data. My objective related to this question is the (what I > think is a hidden) argument “- -12” when using bbregister (v. 1.49.2.3 > FreeSurfer 5.3). Will this denote 12 degrees of freedom for my > registration? If so, why is this argument hidden (not in the manual or > --help) and what are your insights when registering diffusion data to > the Freesurfer T1 image? Should I keep 12dof or just do a simple rigid > body registraion (e.g. 6 dof) > > Thanks in advance for your response, > Rodrigo > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
