You can just run recon-all with the -wmparc flag. It should be pretty quick, less than 30 min or soo
On 08/04/2015 12:04 PM, pablo najt wrote: > Thank you this subject had a zip copy of the wmparc.stats > Now I am missing this file from another subject. Do I need to run > recon-all from start or is there a shortcut for getting this file? > Thanks Doug. > Pablo > > > Date: Tue, 4 Aug 2015 11:42:43 -0400 > > From: gr...@nmr.mgh.harvard.edu > > To: freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Freesurfer] qdec - Generate stats data table > > > > Have you looked in /Volumes/NEW_VOLUME/GBS/117AS/stats/wmparc.stats to > > see if there might be a problem? > > > > On 08/04/2015 05:43 AM, pablo najt wrote: > > > Dear FS experts, > > > I am trying to generate my stats data tables with QDEC -after > > > successfully loading my data table- and come across the following > error. > > > Any recommendations would be greatly appreciated. > > > Thank you in advance > > > Pablo > > > > > > Data table loading completed successfully. > > > > > > SUBJECTS_DIR is '/Volumes/NEW_VOLUME/GBS' > > > > > > mkdir -p /Volumes/NEW_VOLUME/GBS/qdec/stats_tables/ > > > > > > > > > ---------------------------------------------------------- > > > > > > asegstats2table --common-segs --meas volume --tablefile > > > /Volumes/NEW_VOLUME/GBS/qdec/stats_tables/aseg.volume.stats.dat > > > --statsfile=aseg.stats --subjects 001ER 007JC 011GB 015NOK 018AM > 022LH > > > 041WVDP 045PC 054JB 058CS 062AH 070CDc 082MOHb 085CLa 090BC 093DC > > > 095RA 100MOGc 103FC_6 108JMCM 117AS 121JB 137ED 156PMC 176VOD 181CD > > > 188SL 192AL 214VH 229PK 240PE 246KF 258TOD 267OMCN 279SB 285SK 300VW > > > 301EK 304CD 322MS 338JM 346FC_fep 352DFc 360PC 366BLh 383AW 387SD > > > 389NM_first 393AGG 398JK 403SH 409MCa 414MOB 421JC 427LH 433MON > 456MWb > > > 461DC 464DDc 475GM 489MOC 492HGc 497RF 501POT 512EQ 532CC 561AGc > 569AG > > > 574BH 578DCa 582RG 585AOD 589JL 596JT 600MORb 605PS 615KS 620CB 624PW > > > 635AG 650RCd 655PMCE 660AQ 668JG 673JK 699MOC 701TG 703MHc 711SJ > 718PJ > > > 732PS 736HODc 741JT 750MD 758JOLT 762MJ 777MCb 783DMCM 792GF 807YG > > > 808MM 818NL 824MM 853MR 864AF 868ALF 872DCc 888MOB 896EF 905PG_5 > 914JB > > > 917JH 923BOM 930TL 941MM 948SC 959FD 984PL 989OB 997SG > > > > > > SUBJECTS_DIR : /Volumes/NEW_VOLUME/GBS > > > > > > Parsing the .stats files > > > > > > Building the table.. > > > > > > Writing the table to > > > /Volumes/NEW_VOLUME/GBS/qdec/stats_tables/aseg.volume.stats.dat > > > > > > > > > ---------------------------------------------------------- > > > > > > asegstats2table --common-segs --meas volume --tablefile > > > /Volumes/NEW_VOLUME/GBS/qdec/stats_tables/wmparc.volume.stats.dat > > > --statsfile=wmparc.stats --subjects 001ER 007JC 011GB 015NOK 018AM > > > 022LH 041WVDP 045PC 054JB 058CS 062AH 070CDc 082MOHb 085CLa 090BC > > > 093DC 095RA 100MOGc 103FC_6 108JMCM 117AS 121JB 137ED 156PMC 176VOD > > > 181CD 188SL 192AL 214VH 229PK 240PE 246KF 258TOD 267OMCN 279SB 285SK > > > 300VW 301EK 304CD 322MS 338JM 346FC_fep 352DFc 360PC 366BLh 383AW > > > 387SD 389NM_first 393AGG 398JK 403SH 409MCa 414MOB 421JC 427LH 433MON > > > 456MWb 461DC 464DDc 475GM 489MOC 492HGc 497RF 501POT 512EQ 532CC > > > 561AGc 569AG 574BH 578DCa 582RG 585AOD 589JL 596JT 600MORb 605PS > 615KS > > > 620CB 624PW 635AG 650RCd 655PMCE 660AQ 668JG 673JK 699MOC 701TG > 703MHc > > > 711SJ 718PJ 732PS 736HODc 741JT 750MD 758JOLT 762MJ 777MCb 783DMCM > > > 792GF 807YG 808MM 818NL 824MM 853MR 864AF 868ALF 872DCc 888MOB 896EF > > > 905PG_5 914JB 917JH 923BOM 930TL 941MM 948SC 959FD 984PL 989OB 997SG > > > > > > SUBJECTS_DIR : /Volumes/NEW_VOLUME/GBS > > > > > > Parsing the .stats files > > > > > > ERROR: The stats file > /Volumes/NEW_VOLUME/GBS/117AS/stats/wmparc.stats > > > is not found or is too small to be a valid statsfile > > > > > > Use --skip flag to automatically skip bad stats files > > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu > > Phone Number: 617-724-2358 > > Fax: 617-726-7422 > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > whom it is > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > > but does not contain patient information, please contact the sender > and properly > > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
