* Can you run the following preproc-sess -debug -s nmasa_031_130412 -fsd bold -stc up -surface fsaverage lhrh -min305 -fwhm 5 -per* |& tee fordoug.log
and send me fordoug.log On 07/22/2015 02:12 PM, Morenikeji Adebayo wrote: > Hi there, > > I’m running stable: > > source /usr/local/freesurfer/stable5_3_0 > > Thanks, > Keji > >> On Jul 21, 2015, at 4:56 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >> >> what environment are you running in? ie, dev or stable? >> >> On 7/21/15 2:12 PM, Morenikeji Adebayo wrote: >>> Hi there, >>> >>> *When running selxavg for the following session:* >>> >>> nmasa_031_130412 >>> * >>> * >>> *The following error message was generated:* >>> * >>> * >>> Error using MRIread (line 76) >>> ERROR: cannot determine format of >>> /autofs/cluster/iaslab/NMASA/mri/func/encoding/nmasa_031_130412/bold/015/masks/brain.mni305.2mm >>> (MRIread) >>> >>> Error in fast_selxavg3 (line 146) >>> runmask = MRIread(flac.maskfspec); >>> * >>> * >>> *I did some investigating and discovered that all the bold runs for >>> this participant are missing the following files:* >>> * >>> * >>> .../func/encoding/nmasa_031_130412/bold/015/masks/brain.mni305.2mm >>> .../func/encoding/nmasa_031_130412/bold/015/masks/brain.fsaverage.lh.nii.gz >>> .../func/encoding/nmasa_031_130412/bold/015/masks/brain.fsaverage.rh.nii.gz >>> * >>> * >>> * >>> So I ran: >>> >>> preproc-sess -s nmasa_031_130412 -fsd bold -stc up -surface >>> fsaverage lhrh -min305 -fwhm 5 -per >>> >>> * >>> * >>> * >>> *Which generated the following error message:* >>> >>> if: Expression Syntax >>> >>> **Do you have any idea what might be going wrong with this subject >>> or what this error message (**if: Expression Syntax) **means?** >>> * >>> * >>> * >>> * >>> Thanks, >>> Keji >>> --- >>> Morenikeji Adebayo >>> Clinical Research Coordinator >>> Department of Psychiatric Neuroscience >>> Massachusetts General Hospital >>> (p) 617.643.6347 >>> k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mgh.harvard.edu> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > --- > Morenikeji Adebayo > Clinical Research Coordinator > Department of Psychiatric Neuroscience > Massachusetts General Hospital > (p) 617.643.6347 > k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mgh.harvard.edu> > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
