the command line?
>
>> On Sep 24, 2013, at 3:40 PM, Douglas N Greve
>> wrote:
>>
>> not from within tkmedit, but you can open two instances of it
>> doug
>>> On 09/24/2013 11:58 AM, Jonathan Holt
do 1000 iterations instead
> of 5 anyways.
> Thank you very much!
> Sincerely,
> Ye
>
>
>
>
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--
Douglas N. Gre
. My ram is 4.0GB and the virtual memory is 7.8GB.
> Would you please shine some light on what's going on? I can't seem to
> find an executable solution from the archive.
> Thank you very much!
> Sincerely,
> Ye
>
>
> On Tue, Sep 24, 2013 at 3:14 PM, Douglas N Greve
k you in advance,
> Connor Lane
>
>
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MGH-NMR Center
gr...@nmr.mgh.harvard.ed
/dolphinede/Desktop/Probanden/qdec/Untitled --surf
> fsaverage lh --label
> /Users/dolphinede/Desktop/Probanden/fsaverage/label/lh.aparc.label --C
> /Users/dolphinede/Desktop/Probanden/qdec/Untitled/contrasts/lh-Avg-Intercept-pial_lgi.mat
>
> --C
> /Users/dolphinede/Desktop/P
**
> Please see terminal output and log file in attachment.
> PS: if you ever wonder, the time on my virtualbox is 1hr ahead of my host.
>
> Thank you so much for your patience.
>
> Sincerely,
> Ye
>
>
>
> On Tue, Sep 24, 2013 at 6:08 PM, Douglas N Greve
> mailto:gr
sing FS 5.3 stable.)
> Thank you for your time!
>
> Best,
> Panos
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>
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(203) 737-5454
>
>
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 6
thing works just fine?
>
> I would really appreciate hearing your overall recommendation on this.
>
> Connor
>
>
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/
at should work, but you'll have to do the bookkeeping
doug
>
> Connor
>
> On 9/26/13 2:14 PM, "Douglas N Greve" wrote:
>
>> I would actually put the data straight onto fsaverage, smooth there,
>> and do the FSL analysis there. You will need to put it on f
> the fsaverage suface or volume. The volume size in the mri folder of
> fsaverage is 256*256*256 and even though there is a transform function
> I am not sure how to match two volumes with very different sizes.
> Is this even possible?
>
> Thanks,
> Maryam
y what I want is labels for brodmann areas 20, 38, 46 and 9. Is
> there any way to get those for freesurfer?
>
> Maryam
>
>
>
>
> On Thu, Sep 26, 2013 at 5:45 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> Hi Maryam, it is not easy to do
of Osteopathic Medicine
> - Neuroscience Program
>- Bozoki Lab: Neurology/Radiology
>
>
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hat ApplySubCortMask = 1; by default). So I'm pretty confused, and
> I'm just not sure that I'm doing things the right way...
>
> Thanks in advance,
> Leila
>
>
>
> ___
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> Freesurfer@nmr.
gt;
> Are there any suggestions to ameliorate this problem?
>
> Thanks!
> --
> Paul Beach
> DO/PhD candidate - Year VI
> Michigan State University
> - College of Osteopathic Medicine
> - Neuroscience Program
>- Bozoki Lab: Neurology/Radiology
>
>
> _
ht? Secondly, which total area is more reasonable? Thanks.
>
> XJ Kang
>
>
>
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>
>
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nm
email. Thank you very much!
> All the best,
> Wen Zhang
> 2013-09-29
> ------------
> wen.zhang55
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bug
r.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harva
first place.
>
> I'm suspicious that this is occurring because I'm using
> '/mni305.cor.mgz/' instead of '/mni305.2mm.nii.gz/' for the 'mov'
> command. However, I don't have the latter file anywhere in my
> Freesurfer directory. T
put up actual images). I've been using AFNI to view them.
>
>
> On Mon, Sep 30, 2013 at 7:23 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> Is this in tkmedit?
>
>
> On 09/30/2013 06:59 PM, Paul Beach wrote:
>
> Hi Doug,
&g
E: /APPLICATIONS/freesurfer
>
> Build stamp: freesurfer-Darwin-lion-stable-pub-v5.2.0
>
> Kernel info: Darwin 12.0.0 x86_64
>
> -
>
>
> --
gt;
> Thanks a lot
>
> Dani
>
>
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MGH-NMR Center
gr...@nmr.mgh.harvard.
I have to say that I'm stumped. Do you really need to resolve this
question?
doug
On 10/01/2013 12:27 PM, Leila Reddy wrote:
> Hi Doug,
>
> Here it is.
>
> cheers,
> Leila
>
> ------------
> *From:
/mri_vol2vol --mov
>
> /extern/research/tools/freesurfer-5.3.0/subjects/fsaverage/mri.2mm/mni305.cor.mgz
> \/
> /--targ
>
s up but I'd need to know where I can
> find this information.
>
> Thanks, Caspar
>
>
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--
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MGH-NMR Center
gr...@nmr.
est regards,
> Amirhossein Manzouri
>
>
>
>
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.
iel" Yang, PhD
> Postdoctoral Researcher
> Yale Child Study Center
> New Haven, CT
> (203) 737-5454
>
> On 9/26/13 12:26 PM, "Douglas N Greve" <mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> They might be sampling to diffe
P.O. Box 616, 6200 MD Maastricht, The Netherlands
> T +31 43 38 84 090 F +31 43 38 84 092
>
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>
>
--
D
here?
>
> Thanks!
> Daniel
>
> --
> Yung-Jui "Daniel" Yang, PhD
> Postdoctoral Researcher
> Yale Child Study Center
> New Haven, CT
> (203) 737-5454
>
> On 10/1/13 6:00 PM, "Douglas N Greve" <mailto:gr...@nmr.mgh.harvard.edu>> wr
> --
> Yung-Jui "Daniel" Yang, PhD
> Postdoctoral Researcher
> Yale Child Study Center
> New Haven, CT
> (203) 737-5454
>
> On 10/1/13 6:11 PM, "Douglas N Greve" <mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> I don't understa
__
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--
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fs
>
> On Wed, Oct 2, 2013 at 1:05 AM, Douglas N Greve
> wrote:
>> Hi Paul, IMHO this is not a problem with the FreeSurfer output it is a
>> problem with the visualization tools you are using. Have you contacted the
>> developers? I think the data are fine and the informati
th "mri_segstats", but what I get
> is individual values for all my subjects in the terminal, so it is
> quite boring to pass all the values to a table.
>
> Thanks a lot,
>
> Dani
>
>
>
> Message: 1
> Date: Tue, 01 Oct 2013 11:58:57 -0400
>
t; *** If I remove this flag, everything looks fine except for the fact
> that all activity outside brain is masked!
>
>
> --
> Shahin Nasr
>
> PhD in Cognitive Neuroscience
> Martinos Imaging Center, MGH
> Harvard Medical School
>
--
Douglas N. Greve, Ph.D.
MGH-NMR C
effects of noise and autocorrelation and use the
> regression coefficients. However, mri_glmfit (v5.1) does not seem to
> output pcc maps of the contrasts (contrary to selxavg3-sess on the
> single subject level). How would I get those?
>
> Thanks, Caspar
>
>
>
the regression coefficients
> instead. However, I'd still like to get pcc maps from them, if there
> is a way to do so in FSFAST.
> Thanks, Caspar
>
>
>
>
> 2013/10/3 Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>>
>
>
> On 10/03/2013 10:39 A
of
>>> >>
>>>
>>> /autofs/cluster/tootell/pitcairn/1/shahin/Retina_Prj/Sbj_53/abir/bold/008/masks/.mni305.1mm
>>> >> (MRIread)
>>> >>
>>> >>
>>> >> Error in fast_sel
h.harvard.edu/mailman/listinfo/freesurfer
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/f
> Input 0060 1.00 46 58 6
> Input 0062 1.00 46 45 5
> etc.
>
> contrast:
> 0 0 .5 0 0
>
> Is this correct? Thanks in advance!
>
> Anita
>
>
>
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> Freesurfer@nmr.mgh.harvard.edu
>
:mniqure...@gist.ac.kr>
> URL : http://bmssa.gist.ac.kr <http://bmssa.gist.ac.kr/>
> Pplease don't print this e-mail unless you really need to
>
>
>
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> h
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mg
Doug,
On Thursday, October 3, 2013, Douglas N Greve wrote:
It sounds like two issues:
1. p-values not consistent with your program. What did you use
to compute? Did you do a two-sided (which is what fsfast uses)?
I used ttest in Matlab, two sided.
2. Using pcc
trange. They range from -630 to 36 for my particular dataset.
> I was expecting something between -1 and 1.
> Caspar
>
>
> 2013/10/4 Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>>
>
> I think you are conflating the 1st level and the 2nd level. You
> cou
du
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.h
th13.sig.ocn.annot
> -t ${subject}/surf/lh.pial_lgi -f ${subject}/stats/lh.parietal_lgi.stats
> ${subject} lh
>
> Thank you!
> Tara
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...@nmr.mgh.harvard.edu"
>
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Sent:* Saturday, October 5, 2013 9:00 AM
> *Subject:* Freesurfer Digest, Vol 116, Issue 14
>
> --
>
> Message: 1
> Date: Fri, 04 Oct 2013 12:21:
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> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki
ntrast of positively activated Condition A and Positively
> activated
> condition B.
>
> Is there a way to exclude the negatively activated voxels from the
> Condition A vs Passive and Condition B vs Passive contrasts
> when looking at
&g
_
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>
>
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.n
eight to the hemisphere with larger area.
>
> Because it's in a table, you can then use this as a covariate in your FSGD,
> but I thought I read that some people do not recommend using global thickness
> as a covariate.
>
> -Kayle
>
>> Date: Fri, 04 Oct 2013 19:25:07 -0400
was wondering whether there was an easier way.
>>>
>>> Thanks in advance,
>>> Panos
>>> ___________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu
/lh-Avg-pial_lgi-trait-Cor/mc-z.abs.th13.sig.ocn.annot
>
> Thank you for the help!
> Tara
>
>
>
> ----- Original Message -
> From: "Douglas N Greve"
> To: freesurfer@nmr.mgh.harvard.edu
> Sent: Friday, October 4, 2013 6:29:49 PM
> Subject: Re: [Freesurfer
rfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReport
> denied”
>
>
> Message: 17
> Date: Mon, 07 Oct 2013 11:01:23 -0400
> From: Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>>
> Subject: Re: [Freesurfer] FSL masks applied to Freesurfer surfaces?
> 116(14)
> To: freesurfer@nmr.mgh.harvard.edu <mailto:f
Best regards
>
> Dani
>
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-7
cache. Is this what
> you mean?
>
> Thank you again for the help!
> Tara
>
> - Original Message -----
> From: "Douglas N Greve"
> To: "Tara Ann Miskovich"
> Cc: freesurfer@nmr.mgh.harvard.edu
> Sent: Monday, October 7, 2013 1:59:37
_
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.har
hank you again for the help!
> Tara
>
> ----- Original Message -
> From: "Douglas N Greve"
> To: "Tara Ann Miskovich"
> Cc: freesurfer@nmr.mgh.harvard.edu
> Sent: Tuesday, October 8, 2013 10:48:10 AM
> Subject: Re: [Freesurfer] Cluster Annotation f
--avgwf
mc-z.abs.th13.sig.ocn.dat --excludeid 0
where y.mgh is the file created by qdec to be used in the glm analysis
doug
On 10/08/2013 03:01 PM, Tara Ann Miskovich wrote:
> version 5.0.0
>
> - Original Message -
> From: "Douglas N Greve"
> To: "Tara An
gt; - Original Message -
> From: "Douglas N Greve"
> To: "Tara Ann Miskovich"
> Cc: freesurfer@nmr.mgh.harvard.edu
> Sent: Tuesday, October 8, 2013 2:15:33 PM
> Subject: Re: [Freesurfer] Cluster Annotation file and mris_anatomical_stats
>
>
> OK,
, Caspar M. Schwiedrzik wrote:
> Hi Doug, did you already have a chance to look into this? Thanks, Caspar
>
>
> 2013/10/4 Caspar M. Schwiedrzik <mailto:cschwie...@rockefeller.edu>>
>
> Done. Thank you very much for looking into this.
> Caspar
>
>
> 20
m the slopes or the t-values?
> Caspar
>
>
>
> 2013/10/9 Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>>
>
>
> Oh, yes, sorry. The reason that mri_glmfit_pcc is failing is
> because this is a one-sample group mean (design matrix a column of
&
hat computed?
> Thanks, Caspar
>
> On Wednesday, October 9, 2013, Douglas N Greve wrote:
>
> If it is just an effect size you can compute gamma.mgh/rstd.mgh
> doug
>
> On 10/09/2013 01:39 PM, Caspar M. Schwiedrzik wrote:
>
> Hi Doug,
> this is co
TS_DIR/fsaverage/label/rh." before the path. Or,
> should I just create labels for each analysis, run mris_segstats for each
> cluster, and then combine them all back together with grep?
>
> Thanks,
> -Kayle
> ___
> Freesurfer
ation in this e-mail is intended only for the person to whom it is
>> addressed. If you believe this e-mail was sent to you in error and the e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If
st
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr
etely yellow (5 on the colour bar).
> How do I interpret this?
>
> Any help would be much appreciated. Thanks,
> Elin
>
>
>
>
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> htt
. Would you please advise how to run the same analysis with
> DOSS from terminal and if it is possible to look at the results in
> QDEC Display again.
>
> --
> Best regards,
> Amirhossein Manzouri
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
P
;
> tksurfer fsaverage lh inflated -overlay /lh_groupdiff.dir/groupdiff/gamma.mgh
>
> Thanks
>
> Message: 8
> Date: Wed, 16 Oct 2013 11:47:59 -0400
> From: Douglas N Greve
> Subject: Re: [Freesurfer] gamma.mgh
> To: freesurfer@nmr.mgh.harvard.edu
> Message-ID: <525eb52f.5
w.partners.org/complianceline . If the e-mail was sent to you
> in error
> but does not contain patient information, please contact the sender
> and properly
> dispose of the e-mail.
>
>
>
> ___
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> Free
and my
> template seems to be very different (attached file), do you know why ?
>
> Sophie
>
>
>
> Le 18/10/13 16:19, « Douglas N Greve » a écrit
> :
>
>> Do you mean that the inflated surface has more curves in it than the
>> fsaverage one? What version are
t;
>>
>
>
>
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>
>
> The information in this e-mail is intended only for the person to whom it
; --
> Paul Beach
> DO/PhD candidate - Year VI
> Michigan State University
> - College of Osteopathic Medicine
> - Neuroscience Program
>- Bozoki Lab: Neurology/Radiology
>
>
> ___
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> Freesurfer
e \/
> /-i
> /extern/research/PI/training/beachpau/Beach_FreeSurfer_data/anterior_Salience/anterior_Salience.nii.gz
>
> *-flag?? */*/$FREESURFER_HOME//average/mni152.register.dat/*
> */
> /*
> */
> /*
> Thanks
>
>
> On Mon, Oct 21, 2013 at 11:19 AM, Douglas N G
the ages before running QDEC?
>
> Thanks,
> Crystal
>
>
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MGH-NMR Cen
0.000 -1.418 0.000 0.000 0.000 -0.336
> 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
> 0.000 0.000;
>
> ERROR: matrix is ill-conditioned or badly scaled, condno = 1e+08
>
>
> --
> --
> Laura M. Tully, PhD
>
---
> wen.zhang55
>
>
> ___
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number
On 10/22/2013 01:19 PM, Laura M. Tully wrote:
> Thanks for the suggestions Doug, I have a few clarifying questions
> below, to make sure I understand everything.
>
>
> On Tue, Oct 22, 2013 at 8:02 AM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
&
ogy/Radiology
>
>
> _______
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax:
g mri_glmfit-sim. BUT for both cases I use sign=pos for condition
> A vs. condition B.
>
> Thanks so much!
>
> Best,
> ~Sue
>
>
>
> On Tue, Oct 22, 2013 at 10:50 AM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
>
> Hi Sue, I agree
ut an
> "example-brain" from freesurfer.
>
> Maybe it is possible to tell me where I can find this brain to use it
> for my analysis in combination with my qdec table which I can upload
> without problems.
>
>
> Carina
>
>
>
> - Ursprüngliche Nach
why is fast_selxavg3.m unhappy and XCond so large? Can it not handle 10
> separate blocks?
>
> The entire log file in the 2nd case is attached.
>
>
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&g
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.n
ing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileD
nformation, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you in
>> error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>
>
>
>
egressor
doug
>
> Thank you.
> Dorian
> TJU
>
>
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone
surfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: http
ast_selxavg3.m unhappy and XCond so large? Can it not handle
>>> 10
>>> separate blocks?
>>>
>>> The entire log file in the 2nd case is attached.
>>>
>>>
>>> ___
>>> Freesurfer mailing l
s with the annot file.
>>>>> Thanks in advance for any help.
>>>>> Cheers,
>>>>> Marcos.
>>>>>
>>>>> ___
>>>>> Freesurfer mailing list
>>>>> Freesurfe
gt; ___________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs:
ion and lost my way in some point. I hope you can help me
> with the correct steps to be followed. I still dream of showing the
> hippocampus in a similar way we do with cortex when we load lh.pial
> and lh.aparc.annot.
> Thank you for your help and attention.
> Cheers,
> Marcos.
>
.edu.au*| W *www.rng.org.au
>
>
>
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MGH-NMR Center
gr...@nmr.mgh.harvard.e
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-235
> F-values and T map , are they generated by q-dec?
> That would be great if I can get an answer in more detail since I have
> seen the post in FAQ, just need more information in detail regarding
> calculating the power !
> --
> Best regards,
> Amirhossein Manzouri
>
ction!
> BR
>
>
> On Tue, Oct 29, 2013 at 3:25 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
>
> We don't have a way to do a power analysis directly from QDEC. I
> have some matlab code that does it for univariate analysis.
>
>
ity of Udine and University of Verona, Italy
> /
> ICBN Website: http://icbn.uniud.it/tiki-index.php
> /
>
> /
>
>
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e on the contents of this information is strictly
> prohibited and may be unlawful. If you have received this e-mail
> unintentionally, please immediately notify the sender via telephone at
> (773)
> 406-2464 or email.
>
>
> On Tue, Oct 29, 2013 at 10:25 AM, Douglas N Greve
>
to make sure that not getting the same results does not
> indicate a fundamental problem in my paradigm files.
>
> Thanks!
> Suzanne
>
>
> On Tue, Oct 29, 2013 at 3:31 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> Hi Suzanne, can you sen
sponse on the second question. I am not sure what
> you mean with demeaning, so I guess that I am not doing that :-) I
> just wanted to make sure that not getting the same results does not
> indicate a fundamental problem in my paradigm files.
>
> Thanks!
> Suzanne
>
>
> O
Dear Douglas, Please, find attached aseg.stats files for subj1 and
> subj2. Thanks Daniel
>
> Message: 4
> Date: Tue, 08 Oct 2013 11:39:11 -0400
> From: Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>>
> Subject: Re: [Freesurfer] missing eTIV in asegstats2tabl
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