The full error msg is not in the subject line. My guess is that the "lh." in front of "Yeo" in the srcsurfval is causing the problem
On 10/23/2013 03:17 PM, Paul Beach wrote: > Hello FS experts, > > I'm attempting to transform the Yeo2011 annotations (lh & rh) from > fsaverage to individual subjects so as to then sample the cortical > maps to subject surfaces using mri_label2vol. However, I'm getting the > error in the subject line when I put in the following commands: > > /mri_surf2surf --srcsubject fsaverage \/ > /--srcsurfval lh.Yeo2011_17Networks_N1000.annot \/ > /--trgsubject HS_001 --trgsurfval lh.Yeo_17Network_native.annot --hemi lh/ > > I suspected that I have to put a src_type and trg_type in there, but I > wasn't sure what type of types would be appropriate for use in > mri_label2vol. For the latter command I was planning on utilizing > something similar to a previous e-mailer's command (below): > /mri_label2vol --annot lh.Yeo2011_17Networks_N1000.HS_001.annot \/ > /--o outfile.nii.gz --hemi lh --subject HS_001 \/ > /--temp $SUBJECTS_DIR/HS_001/mri/orig.mgz --identity/ > > Any suggestions for getting past this error? > > Thanks for your help, > Paul > -- > Paul Beach > DO/PhD candidate - Year VI > Michigan State University > - College of Osteopathic Medicine > - Neuroscience Program > - Bozoki Lab: Neurology/Radiology > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
