you can do something like this cd $SUBJECTS_DIR/$subject
mri_segstats --slabel $subject lh label/lh.cortex.label --i surf/lh.thickness --id 1 --sum stats/lh.meanthickness.dat On 10/04/2013 05:22 PM, Mollie Bayda wrote: > Hi, > I am trying to calculate whole-brain mean cortical thickness in each > individual subject for correction of regional mean thicknesses. > I see on the wiki that this is recommended to be done by: > bh.thickness = (lh.thickness X lh.area) + (rh.thickness X rh.area) / > (lh.area +rh.area) > In my table I see lh and rh total area but I do not see lh and rh > thickness. All I see is mean thicknesses for each region. Are the > total rh and lh mean thicknesses supposed to appear in the table? > Thanks! > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
