How are you determining that they are lr flipped? On 10/21/2013 11:18 PM, wen.zhang55 wrote: > Dear Freesurfer： > I am now working in converting cortical labels from freesurfer to > volumetric masks. First i gained the registration matrix by > bbregister, then applied those matrix to tranform ROI labels into > native space using label2vol. However, when i got the final .NII > results, both of them turn out to be L-R fliped. (left ROI on the > right hemisphere). From my understanding, freesurfer will automaticly > recognize the head direction of the original T1 images and my original > T1 data contains the flip information due to the way we scaned. > So why this happen? By the way, the recon-all results did good. > Thank you very much! > best, > Cowen > 2013-10-22 > ------------------------------------------------------------------------ > wen.zhang55 > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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