Hmm, when I run asegstats2table EstimatedTotalIntraCranialVol is the last column. What version are you using? doug
On 10/02/2013 02:50 AM, Daniel Ferreira wrote: > Dear Douglas, > > Thanks for your quick answer. Yes, all my subjects have the measure > "EstimatedTotalIntraCranialVol" in their "aseg.stats" file. The > problem is that when I run "asegstats2table", this variable is not > exported to the created text file. > > I wonder if there is some way to extract eTIV for all my subjects at > the same time. I manage to do it with "mri_segstats", but what I get > is individual values for all my subjects in the terminal, so it is > quite boring to pass all the values to a table. > > Thanks a lot, > > Dani > > > > Message: 1 > Date: Tue, 01 Oct 2013 11:58:57 -0400 > From: Douglas N Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > Subject: Re: [Freesurfer] missing eTIV in asegstats2table > To:freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> > Message-ID: <524af141.3060...@nmr.mgh.harvard.edu > <mailto:524af141.3060...@nmr.mgh.harvard.edu>> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed > > It should still be there. I changed the name to > EstimatedTotalIntraCranialVol, eg the line now looks like > > > # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total > Intracranial Volume, 1509814.835086, mm^3 > > > On 10/01/2013 10:50 AM, Daniel Ferreira wrote: > > Hi, I just run my first asegstats2table in version 5.3 of FS. Is > not eTIV included in the generated file anymore? I know that I can > get eTIV with mri_segstats --subject subjid --etiv-only but, is it > any way to get the values for all my subjects in a text file as > asegstas2table does? Thanks a lot Dani > _______________________________________________ Freesurfer mailing > list Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs:surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop:https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing:ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > ------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > End of Freesurfer Digest, Vol 116, Issue 7 > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
