External Email - Use Caution
Debian 9 looks like it was the current version when Freesurfer 6 was
released in 2017 for CentOS6 and MacOS. But even if Freesurfer 6
runs on Debian 9, it’s not expected to run on current versions of Debian or
CentOS because of system library cha
External Email - Use Caution
Is there a way to install freesurfer6 on Debian? I see only CentOS packages
available for freesurfer6.
Or, is there a way to build from source on Debian?
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard
Greve"
To: "Freesurfer support list"
Sent: Tuesday, July 2, 2024 11:31:16 PM
Subject: Re: [Freesurfer] Scanner and Freesurfer-version differences
On 7/1/2024 1:05 AM, Bronwyn Overs wrote:
External Email - Use Caution
Hi Freesurfer Mailing List,
I work on a large bipo
a single Philips 3T
scanner and these images were processed with Freesurfer version 5.3.
We have just now acquired a third imaging time-point that was
completed on a different scanner (Siemans, /n/~120) using a different
acquisition protocal. So I have three questions for the mailing list
images were
processed with Freesurfer version 5.3. We have just now acquired a third
imaging time-point that was completed on a different scanner (Siemans, n ~120)
using a different acquisition protocal. So I have three questions for the
mailing list, that I'm hoping will inform the design o
hes,
Henry
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Adrian Korbecki
Sent: 11 February 2024 12:01
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Bayesian Segmentation with Histological Atlas -
FreeSurfer Version
⚠ Caution: Exter
External Email - Use Caution
Good morning,
I recently came across the Bayesian Segmentation with Histological Atlas
feature during my FreeSurfer research, and I'm very interested in trying it
out. However, I found that my current FreeSurfer version is from June 2023, an
stion: I am utilizing Synthsr version 2.0. Is
this particular version included in The 7.4.1 version of
freeusrfer?RegardsHengamehFrom: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu>
on behalf
of hmarz...@student.ubc.ca<hmarz...@student.ubc.ca>Sent:
...@nmr.mgh.harvard.edu
on behalf of hmarz...@student.ubc.ca
Sent: Monday, July 31, 2023 11:38:48 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Freesurfer version and Installation
[CAUTION: Non-UBC Email]
External Email - Use Caution
Dear Freesurfer developers,
Previously
External Email - Use Caution
Development builds are continually updated and may not be stable, i.e., so the
March 31st development build is no longer available. I suggest using one
of the release builds listed on the release page. The 7.4.1 build from
this June is the most rec
External Email - Use Caution
Dear Freesurfer developers,
Previously, I downloaded the
freesurfer-linux-centos7_x86_64-dev-20230331-e304091 version and successfully
analyzed some data using this version. Now, I find myself in the need to
reinstall Freesurfer, but I am unable to
External Email - Use Caution
Hello,
We’d like to set up the virtual machine version of freesurfer, but need a
password to unzip the ova.7z file.
Would you be able to send it when you get a chance?
Thank you so much!
Best regards,
Fred
External Email - Use Caution
Hello Jacob,
It looks like some digits at the end of "devel-2019128” are missing, but I read
that to be a development build from December of 2019.
If you look at the dates on the 7.X releases
under https://secure-web.cisco.com/1UnwnrVRzttVZt3syMWUb0Da
External Email - Use Caution
Good afternoon,
I have run recon-all for my subjects, however I just realised I am using
the ver devel-2019128, I wonder which version is this?
Is it recommended to re-run the recon-all using the newer updates? (At
present we have the option of Freesu
Dear Anna,
There’s 3 factors affecting the results:
1. Atlas: we haven’t changed that in ages.
2. Optimization in segmentation code: there’s tiny differences in there but as
long as you’ve used the same version for every case, you should be good.
3. Version of FS used to process the subject. Thi
External Email - Use Caution
Hello Freesurfer experts!
We have previously extracted hippocampal subfields and nuclei of the amygdala
using the beta version of segmentHA_T1.sh routine with Freesurfer 6 beta. We
are wondering if there is any reason to expect volumetric differences
External Email - Use Caution
Dear Fs experts,
We have multiple subjects with strong/focal atrophy processed with
Freesurfer5.1
We want to re-process them to the newest version in order to have all the
capabilities/segmentations/outputs from the newest recon-all, but we do NOT
want
;
> *Sent:* Monday, August 1, 2022 12:44 AM
> *To:* 'Freesurfer support list'
> *Subject:* Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
>
>
> External Email - Use Caution
>
> Hi Anastasia,
>
>
>
> I thought he wants me to run trac-
d.edu
Cc: kingwai@gmail.com
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
External Email - Use Caution
There is a change related to that,
Date: Mon Jul 25 21:24:30 2022 -0400
trac-preproc. #BF. Changed expected thalseg version to 1.3; also added an
option to be
reesurfer]
TRACULA in FreeSurfer version 7.3 Indeed. Doug sent you a modified version
of trac-preproc, which is a script that's called by trac-all. The idea was for
you to overwrite $FREESURFER_HOME/bin/trac-preproc with the version that Doug
sent, then run trac-all like before. Did you try
#x27;Freesurfer support list'
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
External Email - Use Caution
Hi Anastasia,
I thought he wants me to run trac-preproc.sh he sent to run it directly.
I wasn’t told to replace it with the one in the original 7.3.
After re
config.file runs w/o problem.
�
Thanks,
�
King-Wai
�
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Yendiki, Anastasia
Sent: Monday, August 1, 2022 12:15 AM
To: 'Freesurfer support list'
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
�
Indeed. Doug sent you
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of kingwai@gmail.com
Sent: Monday, August 1, 2022 12:10 AM
To: 'Freesurfer support list'
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
External Email - Use Caution
Hi Anastasia,
The problem is in 7.3,
(ThalamicNuclei.v13.T1.FSvoxelSpace.mgz).
�
Thanks,
�
King-Wai
�
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Yendiki, Anastasia
Sent: Monday, August 1, 2022 12:03 AM
To: 'Freesurfer support list'
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
�
H
pport list'
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
External Email - Use Caution
Hi Douglas,
Thank you for looking into this.
It gives the following error.
trac-preproc.sh -c config.file
intrareg: Undefined variable.
Thanks,
King-Wai
From: frees
@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
�
I don't know; Anastasia is the author. She's busy today and tomorrow, I was
just trying to push it forward. Does it work with the given config file in 7.2?
On 7/25/2022 5:46 PM, kingwai@gmail.com <m
:42 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
I think the wiki is wrong. Try setting it to 3 in the config
On 7/25/2022 5:30 PM, kingwai@gmail.com wrote:
*External Email - Use Caution *
Hi Douglas,
According to
...@nmr.mgh.harvard.edu
On Behalf Of Douglas N. Greve
Sent: Monday, July 25, 2022 5:42 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
�
I think the wiki is wrong. Try setting it to 3 in the config
On 7/25/2022 5:30 PM, kingwai@gmail.com
arvard.edu
*On Behalf Of *Douglas N. Greve
*Sent:* Monday, July 25, 2022 5:02 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
are you sure the config file is right? it should be defining the
intrareg variable
On 7/25/2022 2:11 PM, kingwai
�
�
�
�
�
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Douglas N. Greve
Sent: Monday, July 25, 2022 5:02 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
�
are you sure the config file is right? it should be defining the
: Undefined variable.
Thanks,
King-Wai
*From:*freesurfer-boun...@nmr.mgh.harvard.edu
*On Behalf Of *Douglas N. Greve
*Sent:* Monday, July 25, 2022 1:55 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
Can you copy the attached trac-preproc
. Greve
Sent: Monday, July 25, 2022 1:55 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] TRACULA in FreeSurfer version 7.3
�
Can you copy the attached trac-preproc into $FREESURFER/bin and try again
(after removing the link)?
On 7/22/2022 8:36 AM, kingwai@gmail.com
Can you copy the attached trac-preproc into $FREESURFER/bin and try
again (after removing the link)?
On 7/22/2022 8:36 AM, kingwai@gmail.com wrote:
External Email - Use Caution
Hi Anastasia,
Just downloaded FreeSurfer version 7.3 and trying out TRACULA.
Ran recon-all
External Email - Use Caution
Hi Anastasia,
�
Just downloaded FreeSurfer version 7.3 and trying out TRACULA.
Ran recon-all, segmentThalamicNuclei.sh, and trac-all in v7.3
However trac-all -prep is looking for ThalamicNuclei.v12.T1.FSvoxelSpace.mgz
from
no special flags. 7.2 will update all of the files, it should preserve
all your edits though
On 6/21/2022 7:21 AM, Aaron Tanenbaum wrote:
External Email - Use Caution
Are there special flags. There are differences between autorecon1 for
both pipeline. Does 7.2 update some of the file
External Email - Use Caution
Are there special flags. There are differences between autorecon1 for both
pipeline. Does 7.2 update some of the files like for instance the T1.mgz do
to differences in the normalizations.
On Sun, Jun 19, 2022, 3:55 PM Douglas N. Greve
wrote:
> You s
You should be able to run 7.2 on top of the 5.3 and at will take all
your edits (make a copy of your 5.3 data first:)
On 6/14/2022 5:26 PM, Aaron Tanenbaum wrote:
External Email - Use Caution
Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of
scans to do. I see that
glad I was of some help. I still need my questions answered.
>
> On Tue, Jun 14, 2022 at 4:33 PM Bouchra Guelib <
> bouchra.gue...@univ-constantine2.dz> wrote:
>
>> External Email - Use Caution
>>
>> The problem is solved, I just changed the freesurfer
ust changed the freesurfer version , thnx for
> your help
>
> Le mar. 14 juin 2022 à 22:27, Aaron Tanenbaum
> a écrit :
>
>> External Email - Use Caution
>>
>> Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans
>> to do. I see that
External Email - Use Caution
The problem is solved, I just changed the freesurfer version , thnx for
your help
Le mar. 14 juin 2022 à 22:27, Aaron Tanenbaum
a écrit :
> External Email - Use Caution
>
> Our lab is moving from FreeSurfer 5.3 to 7.2. We have tho
External Email - Use Caution
Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans to
do. I see that you can give freesurfer a brainmask. I was thinking of
giving freesurfer a brainmask from the previous from 5.3 to 7.1. Is this a
wise idea? Do you have any obje
you will have to be more specific than "totally different"
On 5/24/2022 8:33 AM, Lexuri Fernández de Gamarra Oca wrote:
External Email - Use Caution
Good afternoon,
I have both versions (i.e., version 6.0 and 7.2) downloaded and for
the analyses to run only with the newer version I w
bably points to an older freesurfer version
Indeed, the fsaverage link points to version 6, where we are using 7.1.1
I think it makes sense to change it, but I don't have the permission to do that
( the owner is zkaufman, and the group is fsbuild)
Th
rom the
t-test results.
Da: freesurfer-boun...@nmr.mgh.harvard.edu
per conto di Douglas N. Greve
Inviato: venerdì 8 ottobre 2021 21:34
A: freesurfer@nmr.mgh.harvard.edu
Oggetto: Re: [Freesurfer] R: Freesurfer version
It will be the easiest. If you have not edited t
N. Greve
<mailto:dgr...@mgh.harvard.edu>
*Inviato:* venerdì 1 ottobre 2021 17:18
*A:* freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.
A: freesurfer@nmr.mgh.harvard.edu
Oggetto: Re: [Freesurfer] Freesurfer
version
The 7.0.0
release was recalled because the intensity
normalization *sometimes* did
edu>
*Inviato:* venerdì 1 ottobre 2021 17:18
*A:* freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
*Oggetto:* Re: [Freesurfer] Freesurfer version
The 7.0.0 release was recalled be
glas N. Greve
Inviato: venerdì 1 ottobre 2021 17:18
A: freesurfer@nmr.mgh.harvard.edu
Oggetto: Re: [Freesurfer] Freesurfer
version
viato:* venerdì 1 ottobre 2021 17:18
*A:* freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
*Oggetto:* Re: [Freesurfer] Freesurfer version
The 7.0.0 release was recalled because the intensity
normalization *sometimes* did the wron
Annalisa
Da:
freesurfer-boun...@nmr.mgh.harvard.edu
per conto di
Douglas N. Greve
Inviato: venerdì 1 ottobre 2021 17:18
A: freesurfer@nmr.mgh.harvard.edu
Oggetto: Re: [Frees
Freesurfer] Freesurfer version
The 7.0.0 release was recalled because the intensity normalization
*sometimes* did the wrong thing. It would not surprise me if you were
not seeing any of these effects, but I can't guarantee that it won't
happen in your data. If it was happening, you would see some
rdì 1 ottobre 2021 17:18
A: freesurfer@nmr.mgh.harvard.edu
Oggetto: Re: [Freesurfer] Freesurfer version
The 7.0.0 release was recalled because the intensity normalization *sometimes*
did the wrong thing. It would not surprise me if you were not seeing any of
these effects, but I can't guarant
Hi,
I was wondering if you could help me or give me more information. I have
pre-processed my MRI data using FreeSurfer version 7.0, which has been
recalled. I used the same version for the thalamic segmentation. I have
elaborated my data one year ago. Do I have to pre-process all my data again?
reesurfer@nmr.mgh.harvard.edu>
Betreff: Re: [Freesurfer] Freesurfer: Version of development version?
Hi Tobias - You can see the dates of official version releases here:
https://secure-web.cisco.com/1sY88wu32DUCQV1vqZMVub
the 7.1.1 and 7.2 releases.
Anastasia.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Tobias Ruzok
Sent: Wednesday, September 29, 2021 11:26 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Freesurfer: Version of development version?
External Email - Use Caution
Dear Sir or Madam,
first of all, thanks a lot for providing such a great tool like Freesurfer!
I only have a minor question regarding the version I used:
As I am writing a Paper for a Journal right now, I also wanted to quote the
Freesurfer Version
External Email - Use Caution
Hi,
I was wondering if you could help me or give me more information. I have
pre-processed my MRI data using FreeSurfer version 7.0, which has been
recalled. I used the same version for the thalamic segmentation. I have
elaborated my data one year ago
External Email - Use Caution
Hi,
I was wondering if you could help me or give me more information. I have
pre-processed my MRI data using FreeSurfer version 7.0, which has been
recalled. I used the same version for the thalamic segmentation. I have
elaborated my data one year
On 9/23/2021 11:05 AM, Corinna Bauer wrote:
External Email - Use Caution
Hi Doug,
I'm about to start edits on subjects that have been re-processed in
7.2 using the -fill flag. Before doing so, can you clarify/verify that
we edit the new filled.mgz just the same as we would the wm.m
Did the size of the defect change?
On 9/19/2021 8:36 PM, Paul, Rahul wrote:
Hi freesurfer experts,
I was using FreeSurfer v6 for my research. Recently, I started move to
FreeSurfer v7.2.
I encountered the following issue:
Some patients, that had extra large error (xL error), were running
fi
un...@nmr.mgh.harvard.edu
On Behalf Of Paul, Rahul
Sent: Wednesday, September 22, 2021 10:35 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Freesurfer version
Hi freesurfer experts,
I was using FreeSurfer v6 for my research. Recently, I started move to
FreeSurfer v7.2.
I encounte
Hi freesurfer experts,
I was using FreeSurfer v6 for my research. Recently, I started move to
FreeSurfer v7.2.
I encountered the following issue:
Some patients, that had extra large error (xL error), were running fine
(recon-all) in freesurfer 6 (it took time, but the process finished, and the
Hi freesurfer experts,
I was using FreeSurfer v6 for my research. Recently, I started move to
FreeSurfer v7.2.
I encountered the following issue:
Some patients, that had extra large error (xL error), were running fine
(recon-all) in freesurfer 6 (it took time, but the process finished, and the
External Email - Use Caution
Hello Michael,
Point taken. The issue with the exclusion of files under the ./mni
directory did not change any source code and no binaries were
re-compiled. The timestamps did change on all the files listed under
https://secure-web.cisco.com/1gf9Oc
External Email - Use Caution
Hi,
On 7/21/21 8:20 PM, fsbuild wrote:
> External Email - Use Caution
>
> Hello Kiyotaka,
>
> Please try refreshing your copy/install of the Ubuntu 7.2.0 distribution as
> the packages have been updated to fix the warning below.
I ju
External Email - Use Caution
Dear R,
Thank you very much! I followed your instructions, and it worked perfectly.
Best regards,
Kiyotaka
On Thu, Jul 22, 2021 at 3:20 AM fsbuild wrote:
> Hello Kiyotaka,
>
> Please try refreshing your copy/install of the Ubuntu 7.2.0 distributi
External Email - Use Caution
Hello Kiyotaka,
Please try refreshing your copy/install of the Ubuntu 7.2.0
distribution as the packages have been updated to fix the warning below.
I think you were using the installer, so you could try the commands
below to download and re-ins
Yes, just run recon-all with the -fill option to regenerated the
filled.mgz (it will be the same filled.mgz but it will have a colortable
embedded; it will also create filled.auto.mgz to help keep track of the
edits). The just edit filled.mgz and proceed as normal. When you edit,
make sure you
External Email - Use Caution
Read the release notes. Can I with the new version run a recon-all over
processed 7.1.1. I am interested in the ability to edit filled.mgz and
applying this to 7.1.1 recons.
On Mon, Jul 19, 2021 at 5:46 PM Douglas N. Greve
wrote:
> We are please t
External Email - Use Caution
The default path you show me is exactly what I want! Thank you!
Kiyotaka
On Tue, Jul 20, 2021 at 8:23 PM fsbuild wrote:
> While it does not currently work to change the default install path, that
> default install path for the .deb (and .rpm) 7.2.0
External Email - Use Caution
While it does not currently work to change the default install path, that
default install path for the .deb (and .rpm) 7.2.0 installer files is
/usr/local/freesurfer/7.2.0 (which reads like the path you want to use).
If you already have different rele
External Email - Use Caution
Hello R,
Thank you for letting me know that the deb file is now available. It's so
useful for Ubuntu users to install FreeSurfer using the deb file.
Can I ask you one more question? Can I specify the install directory using
the deb file?
I manage diffe
External Email - Use Caution
Hello Kiyotaka,
You may not need to be concerned about that warning. You can suppress it
by setting the following in your shell environment.
$ export NO_MINC=1
For Ubuntu linux, if you have sudo/root/admin privileges, then you could try
running the i
External Email - Use Caution
Dear Doug,
Thank you for the announcement of 7.2.0 update.
I updated using freesurfer-linux-ubuntu18_amd64.tar.gz and noticed that the
'mni' directory is missing.
As a result, now the shell shows warning about MNI
=
freesurfer-linux-ubun
We are please to announce version 7.2. Mostly bug fixes and
behind-the-scenes enhancements. But there are a few new goodies and one
new "known issue" about defacing. Check out
https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes
doug
___
Freesurfer
Hi Jewelia,
Can you try running without the -parallel flag to see if that’s the issue?
Best
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Jewelia K. Yao
Date: Tuesday, May 4, 2021 at 11:06 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Freesurfer version 7
Subject: [Freesurfer] Installing anither Freesurfer version - lincese not
working
External Email - Use Caution
Dear Freesurfer experts,
I installed another Freesurfer version on my computer and used the same license
of the version installed before. But, it is not working. How should I
-1_acq-wb_mod-t1w_orient-std_brain.nii.gz
/home/fernanda/Documentos/AHEAD/freesurferv5/sub-0002/mri/orig/001.mgz
Em qui., 11 de fev. de 2021 às 11:45, Fernanda Hansen P. de Moraes <
fernandahmor...@gmail.com> escreveu:
> Dear Freesurfer experts,
> I installed another Freesurfer v
External Email - Use Caution
Dear Freesurfer experts,
I installed another Freesurfer version on my computer and used the same
license of the version installed before. But, it is not working. How should
I proceed?
Best regards,
Fernanda Hansen P. de Moraes
fernandahmor
External Email - Use Caution
Dear FreeSurfer experts,
I'd have a quick question on using different installers for the FreeSurfer
7.1.1. release for preprocessing and manual edits:
We initially preprocessed our data using the
freesurfer-linux-centos7_x86_64-7.1.0-20200511-81329
d.edu"
Subject: [Freesurfer] Hippocampal and amygdala subregions using earlier
freesurfer version segmentations
External Email - Use Caution
Hello,
I just wanted to verify that using segmentations from earlier freesurfer
versions (5.3) are valid as input into the subsequent further segment
External Email - Use Caution
Hello,
I just wanted to verify that using segmentations from earlier freesurfer
versions (5.3) are valid as input into the subsequent further
segmentation into the hippocampal and amygdala subregions. I understand the
input volumes will vary based on v
I’m trying to update my current Freesurfer version (from 6.0 to 7.1).
I’d like to know whether the installation procedure for 7.1 would overwrite
the current one (6.0).
Many thanks,
Pilar
> Il giorno 22 ago 2020, alle ore 7:48 AM,
freesurfer-requ...@nmr.
External Email - Use Caution
Hi Freesurfer experts,
I’m trying to update my current Freesurfer version (from 6.0 to 7.1).
I’d like to know whether the installation procedure for 7.1 would overwrite the
current one (6.0).
Many thanks,
Pilar
> Il giorno 22 ago 2020, alle
Hi Barbara and Martin,
I didn't have any problem running FastSurfer with FreeSurfer 7.1.0 either.
Best,
Tashrif
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Barbara,
I think you are asking to run FastSurfer and source FS7.1 binaries instead of
the recommended 6.0. for the surface processing part.
This may work, but it is not recommended. We only tested FastSurfer in
combination with 6.0. as described in the paper. So if you use 7.1 you are on
-boun...@nmr.mgh.harvard.edu
On Behalf Of Barbara Kreilkamp
Sent: Thursday, August 20, 2020 10:00 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] FastSurfer with FreeSurfer version 7.1.0?
External Email - Use Caution
Dear all,
I noticed FastSurfer also seems to run with a 7.1
External Email - Use Caution
Dear all,
I noticed FastSurfer also seems to run with a 7.1.0 FS version.
Or is there any reason not to do this?
Thank you,
Kind wishes,
Barbara
___
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y"
mailto:kathrynmary_wa...@urmc.rochester.edu>>
Reply-To: FS Help
mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Thursday, July 9, 2020 at 7:51 PM
To: FS Help
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] QAtools with Freesurfer version 6.0
Ext
r-boun...@nmr.mgh.harvard.edu>>
on behalf of "Wakim, Kathryn-Mary"
mailto:kathrynmary_wa...@urmc.rochester.edu>>
Reply-To: FS Help
mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Thursday, July 9, 2020 at 7:51 PM
To: FS Help
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesur
o: FS Help
Subject: [Freesurfer] QAtools with Freesurfer version 6.0
External Email - Use Caution
Hi all,
I’m relatively new to Freesurfer, and I am just beginning to check the output
of my recon-alls using QAtools. However, I’m running into a number of
difficulties and errors with QAtool
Yes, we will release a v7 container on dockerhub as soon as we can. Hopefully
by next week once we release a new 7.1 patch.
From: on behalf of David Pagliaccio
Reply-To: FS Help
Date: Tuesday, June 16, 2020 at 4:20 PM
To: FS Help
Subject: [Freesurfer] version 7 docker container
External Email - Use Caution
Hello
I was wondering if Freesurfer version 7 will be released as a container on
docker hub?
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0:44 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Freesurfer version 7.0.0 and hippocampal segmentation
Dear Vanessa,
1. No changes were made in the hippocampal module between 7.0 and 7.1, so
you don’t need to rerun (as the subjects were reconned-all with 6.0, which
doesn’t have any prob
edu/fswiki/ReleaseNotes
I have a couple of questions about the implications of this recall.
We have processed a large dataset using freesurfer version 6, with all subjects
being processed (recon-all) with the same version/platform.
We would now like to segment the hippocampal subfields using the enhance
questions about the implications of this recall.
We have processed a large dataset using freesurfer version 6, with all subjects
being processed (recon-all) with the same version/platform.
We would now like to segment the hippocampal subfields using the enhanced
version of the module as outlined here
We are pleased to announce the release of FreeSurfer version 7.
You can get the new software from here
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
You can find the release notes here
https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes
Let us know how it goes
best
doug and
ubject: Re: [Freesurfer] whether freesurfer version 7 still support GPU
External Email - Use Caution
Hello Dr. Hoopes
Does it mean that in Beta version 7, there is no GPU capability. But stable
version 7 still support the existing GPU capacity.. Is it correct?
BR
Frank
On Tue, Apr
: *"frabob2...@gmail.com"
> *Subject: *[Freesurfer] whether freesurfer version 7 still support GPU
>
>
>
> *External Email - Use Caution*
>
> Hello Freesurfer team
>
>
>
> I checked the freesurfer version 7.0. It says that " but for
Hi Frank,
We still recommend this since freeview benefits from having a fast GPU.
best
Andrew
From: on behalf of Frank Robert
Reply-To: FS Help
Date: Tuesday, April 7, 2020 at 10:15 AM
To: FS Help
Cc: "frabob2...@gmail.com"
Subject: [Freesurfer] whether freesurfer version 7 sti
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