Hi Jewelia,
Can you try running without the -parallel flag to see if that’s the issue?
Best
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Jewelia K. Yao
<jewelia...@princeton.edu>
Date: Tuesday, May 4, 2021 at 11:06 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Freesurfer version 7 reconall -autorecon2-wm error
External Email - Use Caution
Hi Freesurfer Developers,
I am trying to run reconall -autorecon2-wm using Freesurfer version 7 after
making some minor edits to the wm.mgz file. I've tried it on multiple subjects
and still get the same error (recon-all.log attached) when mri_fill starts to
run:
reading segmented volume aseg.presurf.mgz
removing CC from segmentation
Looking for area (min, max) = (350, 1400)
area[0] = 1276 (min = 350, max = 1400), aspect = 0.46 (min = 0.10, max = 0.75)
no need to search
using seed (127, 124, 151), TAL = (1.0, 23.0, 4.0)
*** Error in `mri_fill': double free or corruption (!prev): 0x0000000001c65070
***
reconall -autorecon2-wm runs well with Freesurfer version 6, but since the data
was run through reconall with version 7, I was hoping to to use it for
autorecon as well. I couldn't find any similar errors (specific to version 7)
in the list. Does anyone know if this error is specific to version 7 and if
there's any way to troubleshoot?
Thanks!
Jewelia
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