purposes too.
Best
W.
--
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simply set -DDEAL_II_COMPILE_EXAMPLES=OFF and it will install
the examples in source form only.
We have removed compilation of example steps from the build system
entirely in the current development version.
Best,
Matthias
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For mailing
ion of example steps from the build system
entirely in the current development version.
Best,
Matthias
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On 2/6/25 08:40, David Montiel wrote:
I am trying to install deal.II in a cluster and somehow the compiler is not
recognizing std::filesystem which is used in step-83. However step-83 isn't
marked as having unmet dependencies.
As a results the "make" I use for building dea
I am trying to install deal.II in a cluster and somehow the compiler is not
recognizing std::filesystem which is used in step-83. However step-83 isn't
marked as having unmet dependencies.
As a results the "make" I use for building deal.II fails when building
step-83
I can
ienced anything similar
> and found a solution how to get rid of it.
>
> Best regards,
> Nik
>
>
>
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until we have the new implementation. I would open up an
issue on github and cast a vote among the main developers.
Alternatively, you can extract the functionality from the old
SolutionTransfer
class and copy it into your project, provided you follow the licensing terms
of deal.II.
> T
Hello everyone!
This is deal.II newsletter #308.
It automatically reports recently merged features and discussions about the
deal.II finite element library.
## Below you find a list of recently proposed or merged features:
#18091: Be more precise what we need to #include. (proposed by
il or telephone and
immediately and permanently delete all copies of this message and any
attachments from your system(s). The contents of this message do not
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For ma
iuseppe:
I think this is best done in postprocessing in visit or paraview.
Best
W.
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%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=qn2kDHNAb3K8TlUUoEGnYvEQYZQbajGnqRvrfosVC4U%3D&reserved=0>?
>
> I'll leave this question to those more familiar with the matrix free
> framewo
638742044588241438%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=qn2kDHNAb3K8TlUUoEGnYvEQYZQbajGnqRvrfosVC4U%3D&reserved=0>?
I'll leave this question to those more familiar with the matrix free framework.
Best
W.
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> but also for Trillinos.
>
> Matteo:
> Yes, indeed -- would you like to write a patch that puts this kind of
> information into the documentation? The file in which, I believe, the
> function
> is documented is include/deal.II/fe/fe_tools.h. I think it would make for
&g
learly articulate what happens. "it breaks"
> is
> not a useful starting point for debugging :-) Presumably, there is some
> error
> message, or other information that can help find the cause. I assume
> you've
> also run the program in a debugger?
>
> Bes
Dear all,
I would have a question about the output when using concentric_hyper_shells
<https://www.dealii.org/current/doxygen/deal.II/namespaceGridGenerator.html#abfcc142a9fc905a1abec9315693a57d4>
Is there any function that automatically can obtain and save in output the
spherical coordina
.
Matteo:
Yes, indeed -- would you like to write a patch that puts this kind of
information into the documentation? The file in which, I believe, the function
is documented is include/deal.II/fe/fe_tools.h. I think it would make for a
nice patch to better describe this requirement!
Best
Wolfgang
articulate what happens. "it breaks" is
not a useful starting point for debugging :-) Presumably, there is some error
message, or other information that can help find the cause. I assume you've
also run the program in a debugger?
Best
W.
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... sometimes.
Let me explain my bewilderment:
It may go well for 6 refinement cycles and break at the 7th.
Does anybody have any hint at what I should investigate to figure out the
problem?
Thanks in advance!
Best,
Matteo Malvestiti
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now that it was written several years before
>> we
>> ever started implementing parallel computations.
>>
>> A good first step would be to create a "minimal working example" -- a
>> complete, compilable code that only sets up data structures and then
>> calls the
>>
Was this an issue in the 9.4 versions as well?
Kind regards,
Abdul G.
From: dealii@googlegroups.com on behalf of Matthias
Maier
Sent: Friday, January 31, 2025 5:54 PM
To: dealii@googlegroups.com
Subject: Re: [deal.II] CMakeLists looking for a directory which
patches have different meshes after a few refinements.
I don't know off-hand what is causing this for you, but you probably want to
compare what you are doing with how the GridGenerator::hyper_sphere() function
is doing it:
https://www.dealii.org/current/doxygen/de
Hi Abdul,
You are encountering a configuration bug with our bundled libraries that
was fixed in deal.II version 9.6.0.
Best,
Matthias
On Fri, Jan 31, 2025, at 01:09 CST, Abdul Gafeeth Benjamin
wrote:
> Dear Matthias
>
> Here is the detailed log.
>
> Kind reg
; Amit:
>
> > I studied tutorial 38 that demonstrates the use of Laplace-Beltrami
> > operator in deal.ii. In the "Possibilities for extension" section of the
> > tutorial an example of a 3d surface obtained by transforming a half-
> > sphere is given. It
Dear Matthias
Here is the detailed log.
Kind regards,
Abdul G.
From: dealii@googlegroups.com on behalf of Matthias
Maier
Sent: Thursday, January 30, 2025 7:25 PM
To: dealii@googlegroups.com
Subject: Re: [deal.II] CMakeLists looking for a directory which I do
Amit:
I studied tutorial 38 that demonstrates the use of Laplace-Beltrami
operator in deal.ii. In the "Possibilities for extension" section of the
tutorial an example of a 3d surface obtained by transforming a half-
sphere is given. It has also been mentioned that beca
mesh. Can you
point out which points you are unhappy with?
The way I would approach this is to see what happens if you choose
A=B=C, i.e., a sphere. You know how the mesh on a sphere should look
like -- namely, the same way deal.II creates it with the
SphericalManifold. You should then get in
Can you share the `detailed.log` file from this very installation, please?
As a workaround, you can simply create this directory for the time being
with something like
mkdir -p /home/abdoltjie/dealii-candi/deal.II-v9.5.2/include/deal.II/bundled
Best,
Matthias
On Thu, Jan 30, 2025, at 01:12
delete all copies of this message and any
attachments from your system(s). The contents of this message do not
necessarily represent the views or policies of BITS Pilani.
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I get this error while loading the CMake project:
"CMake Error in CMakeLists.txt:
Imported target "dealii::dealii_debug" includes non-existent path
"/home/abdoltjie/dealii-candi/deal.II-v9.5.2/include/deal.II/bundled"
in its INTERFACE_INCLUDE_DIRECTORIES. Possi
s no where
What is the underlying problem you are trying to solve? AMG is best (and
perhaps only really usable) if applied to elliptic systems. But then you'd be
using CG, not FGMRES. Can you explain what you use the AMG for?
Best
W.
--
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he vectors during
the runtime of the program, then I would suggest to serialize them with
boost. We have a new tutorial on serialization. Please have a look at
step-83 for more information.
https://dealii.org/developer/doxygen/deal.II/step_83.html
I am aware of the functionality - my difficulty l
ee also
https://github.com/dealii/dealii/pull/15706
If you need the old implementation, you can use the
`Legacy::SolutionTransfer` class. However, it is deprecated and will be
removed in the future.
https://dealii.org/developer/doxygen/deal.II/classLegacy_1_1SolutionTransfer.htm
Hello everyone!
This is deal.II newsletter #307.
It automatically reports recently merged features and discussions about the
deal.II finite element library.
## Below you find a list of recently proposed or merged features:
#18053: Reference readme when step-XX.diff is missing. (proposed by
tional_data.n_cycles = 4;
additional_data.w_cycle = true;
additional_data.smoother_sweeps = 2;
additional_data.aggregation_threshold = 1e-2;
preconditioner.initialize(system_matrix, additional_data);
```
best,
Tim
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h
5 alle 11:10:37 UTC+1 peterr...@gmail.com
ha scritto:
> Hi Matteo,
>
> it is probably only the output. DataOut::build_patches() has an additional
> parameter that specifies the curved region (
> https://www.dealii.org/developer/doxygen/deal.II/classDataOut.html#a1303b5d99f1
Hi Matteo,
it is probably only the output. DataOut::build_patches() has an additional
parameter that specifies the curved region (
https://www.dealii.org/developer/doxygen/deal.II/classDataOut.html#a1303b5d99f10f3fae984e7d406cfeb37).
Select CurvedCellRegion::curved_inner_cells.
Best,
Peter
Dear all
I studied tutorial 38 that demonstrates the use of Laplace-Beltrami
operator in deal.ii. In the "Possibilities for extension" section of the
tutorial an example of a 3d surface obtained by transforming a half-sphere
is given. It has also been mentioned that beca
trixFree but with multiple
>> components? Is this better or with some extra optimization?
>>
>> Regards,
>> Chengjiang Yin
>>
>
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nents? Is this better or with some extra optimization?
>
> Regards,
> Chengjiang Yin
>
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?
Regards,
Chengjiang Yin
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sed to
the function? Is there a way to avoid this?
Thanks
Winni
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Hello everyone!
This is deal.II newsletter #306.
It automatically reports recently merged features and discussions about the
deal.II finite element library.
## Below you find a list of recently proposed or merged features:
#18018: Include ../tests.h into a couple more tests. (proposed by
gallery program:
https://dealii.org/developer/doxygen/deal.II/code_gallery_Phase_field_fracture_model_in_3D.html
However, I checked the data on the quadrature point on the refined mesh, It is
not consistent with the data obtained by
fe_values[introspection.extractors.heat_diffu
On 1/20/25 09:00, Lucas P wrote:
Thanks Wolfgang for your answer. But I'm surprised to see that some work
should be done regarding the iterative solvers. I would expect that deal.ii
relies on PETSc to use iterative solvers. And since PETSc can handle complex
numbers, I would not have exp
Thanks Wolfgang for your answer. But I'm surprised to see that some work
should be done regarding the iterative solvers. I would expect that deal.ii
relies on PETSc to use iterative solvers. And since PETSc can handle
complex numbers, I would not have expected this to be a problem.
Dear Deal.II community,
I am using the CellDataStorage class to record my history state variable
and try to interpolate it onto my refined mesh. Therefore, the history data
can be accessible for my analysis of the refined mesh.
However, I checked the data on the quadrature point on the refined
know how to compile deal.II test file, say,
> > tests/base/quadrature_point_data.cc
> > <
> https://github.com/dealii/dealii/blob/master/tests/base/quadrature_point_data.cc
> >.
>
> It is generally quite a lot of work to get individual files to compile
> from
> the
> function in question to demonstrate the error. The content of the vectors
> you
> pass in is not important, they might as well be zero vectors.
>
> Would you be willing to come up with such a piece of code and submit it as
> a
> bug to the github repository? I can&
tually fix the issue, but we can at least tell you where one might have to
look to fix it!
Best
Wolfgang
--
Wolfgang Bangerth email: bange...@colostate.edu
www: http://www.
On 1/17/25 05:54, Junxiang Wang wrote:
I'd like to ask if you know how to compile deal.II test file, say,
tests/base/quadrature_point_data.cc
<https://github.com/dealii/dealii/blob/master/tests/base/quadrature_point_data.cc>.
It is generally quite a lot of work to get individu
r and
found a solution how to get rid of it.
Best regards,
Nik
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"de
Dear Deal.II community,
I install deal.II package through
'''
sudo -i
export REPO=ppa:ginggs/deal.ii-XXX-backports
apt-get update && apt-get install -y software-properties-common
add-apt-repository $REPO
apt-get update
apt-get install libdeal.ii-dev
apt-get install buil
interpolations?
Thanks a lot in advance!
Kind regards,
Matteo Malvestiti
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&
n) at quadrature_point.
> >
> > Is there a way to output the nodal value of the history value? I am
> currently
> > using DataPostprocessorVector to handle my output.
>
> I don't know what the PointHistory class does (did you mis-spell the name
> of a
> deal.
to handle my output.
I don't know what the PointHistory class does (did you mis-spell the name of a
deal.II class?), but if I understand you correctly, then this is the value (or
multiple values) of the solution at a specific point. DataOut does not have
facilities to output point value
Dear Deal.II community,
I'd like to ask for help exporting the history nodal value.
I am currently using the following
const std::vector> lqph =
quadrature_point_history.get_data(cell);
to record some history variables (e.g., max and min) at quadrature_point.
Is there a way to ou
Hello,
I have a working matrix-based solver using Petsc vectors which i am
currently trying to transform to a matrix-free code. When I use the deal.ii
Matrix-free infrastructure with Petsc-vectors eg. using the
distribute_local_to_global function I get the following error message:
error
Hello everyone!
This is deal.II newsletter #305.
It automatically reports recently merged features and discussions about the
deal.II finite element library.
## Below you find a list of recently proposed or merged features:
#17995: Do not make a difference between debug/release mode when to
This is exactly what I was thinking off. Thanks.
On Friday, January 3, 2025 at 7:44:48 PM UTC+3 Wolfgang Bangerth wrote:
>
> Najwa:
>
> > I know that merge triangulation in deal.ii will not work properly if
> there are
> > hanging nodes ( unmatching of the meshes at the
03:49, Gregory Christian wrote:
>> > Error on the dealii side:
>> > -- Performing Test TRILINOS_SEACAS_IS_FUNCTIONAL
>> > -- Performing Test TRILINOS_SEACAS_IS_FUNCTIONAL - Failed
>> > -- SEACAS was found but doesn't seem to include ExodusII. Disabling
>> SEACAS
Dear Matteo,
The best solution here would be to serialize the mesh so you can re-read it
anew. This would be identical to what you would do when you restart a
simulation.
We have a new tutorial that shows just how exactly this is done:
https://www.dealii.org/current/doxygen/deal.II/step_83.html
I understand that this might have gone under the radar for most of our
users.
We (the developers) would like to get your feedback regarding your usage
and ideas about deal.II. This is important for us for current and future
funding and to make sure we steer the development of the library in a
gt; --
>
> Wolfgang Bangerth email: bang...@colostate.edu
> www: http://www.math.colostate.edu/~bangerth/
>
>
>
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On 1/6/25 08:20, Lucas P wrote:
I'm considering starting to use deal.ii with a strong emphasis on complex
numbers equations. I read in the FAQ
<https://github.com/dealii/dealii/wiki/Frequently-Asked-Questions#can-i-solve-problems-over-complex-numbers> that it is recommended t
Dear Daniel,
Thank you very much for your answer. I was indeed able to find a more
detailed report of what was going wrong during the deal.ii test for MueLu
by searching exactly as you mentioned.
Thank you and best regards,
Nik
On Wednesday, January 8, 2025 at 7:26:00 PM UTC+1 d.arnd
Dear James,
Thank you very much for your very kind and detailed reply.
Using your recommendations, I managed to install Trilinos + MueLu working
with deal.ii master. Thank you very much for your help with this!
The only thing I had to change from the default recipe here
https://github.com
Best
W.
--
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expect it.
Best
W.
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https
better way of doing this. I searched the documentation
but did not find anything. Has anyone done something similar and could help
me?
Best,
Davit
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;>>
>>> static QProjector<2>::DataSetDescriptor
>>> dealii::QProjector<2>::DataSetDescriptor::subface(const
>>> dealii::ReferenceCell &, const unsigned int, const unsigned int, const
>>> unsigned char, const unsigned int, const intern
uestion is *
>>
>> *i) does anybody have any experience with this case? when you need
>> subface values for DG + Simplex? *
>>
>> *ii) Should I use meshworker or something more recent? *
>>
>> *iii) I looked into **qprojector.cc, and *
>> QProjector<2&
...@colostate.edu
www: http://www.math.colostate.edu/~bangerth/
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this case? when you need subface
> values for DG + Simplex? *
>
> *ii) Should I use meshworker or something more recent? *
>
> *iii) I looked into **qprojector.cc, and *
> QProjector<2>::DataSetDescriptor::subface.
>
> This function only returns
>
> return ((face_no
returns
return ((face_no * GeometryInfo<2>::max_children_per_face + subface_no) *
n_quadrature_points);
If I manually fix this part to fit simplex, and reinstall deal.ii, do you
think it will fix the problem?
Thanks a lot!
Sanghyun
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gt; -- SEACAS was found but doesn't seem to include ExodusII. Disabling
> SEACAS
> > support.
>
> Greg:
> I have nothing of substance to offer here other than perhaps trying to
> find
> out why the deal.II check fails (i.e., what functionality is missing) and
> then
> wor
, 2025 at 12:29:51 PM UTC-5 avfa...@gmail.com wrote:
> Dear Nik,
>
>
> I’ve been working with deal.II and Trilinos (including MueLu) across
> various platforms, including macOS, for a while now. I understand your
> frustration, as the installation and configuration process can be
Dear Nik,
I’ve been working with deal.II and Trilinos (including MueLu) across
various platforms, including macOS, for a while now. I understand your
frustration, as the installation and configuration process can be tricky.
Let me briefly share some insights based on my experience.
*Key
tance to offer here other than perhaps trying to find
out why the deal.II check fails (i.e., what functionality is missing) and then
working backward trying to find out *why* it is missing from your Trilinos
installation.
Be
Dear User Group,
I recently got a new Apple arm-based M4 laptop running Mac OS Sequoia. My
previous laptop was running Windows and using the Windows Subsystem for
Linux, I managed to install deal.ii together with all the packages I would
like to use.
Now, I tried to install deal.II on the new
pport.
However Trilinos builds just fine, however I think
SEACAS_ENABLE_TESTS='''""". Unsure if dealii checks this or if there is
linker missing in the dealii cmake file.
Best,
Greg
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For mailing list/forum op
Hello everyone!
This is deal.II newsletter #304.
It automatically reports recently merged features and discussions about the
deal.II finite element library.
## Below you find a list of recently proposed or merged features:
#17977: support DoF coupling in FESystem (proposed by tjhei)
https
Hello,
I'm considering starting to use deal.ii with a strong emphasis on complex
numbers equations. I read in the FAQ
<https://github.com/dealii/dealii/wiki/Frequently-Asked-Questions#can-i-solve-problems-over-complex-numbers>
that it is recommended to split the problem in
/Xcode.app/Contents/Developer
>> >> >
>> >> > (base) mmohebuj@CASTFX0F4V2Math ~ % git --version
>> >> >
>> >> > git version 2.39.5 (Apple Git-154)
>> >> >
>> >> > (base) mmohebuj@CAST
the coupling where information from the
two vectors needs to be accessed simultaneously.
Subramanya.
सुब्रह्मण्य .
On Sun, Jan 5, 2025 at 1:51 AM 'Martin Kronbichler' via deal.II User
Group wrote:
Dear Subramanya,
The actual cells associated with the integer indices 'ce
ly.
Subramanya.
सुब्रह्मण्य .
On Sun, Jan 5, 2025 at 1:51 AM 'Martin Kronbichler' via deal.II User Group <
dealii@googlegroups.com> wrote:
> Dear Subramanya,
>
> The actual cells associated with the integer indices 'cell' (that are
> batches in case of SIMD vector
he 'dof_no' argument in the constructor:
https://www.dealii.org/developer/doxygen/deal.II/classFEEvaluation.html#ade40e452949cbefd4f7e6d5580af81c8
- it is the second argument next to MatrixFree.
You can also try to run with separate MatrixFree objects, but then you
need to manually link the
-
> Wolfgang Bangerth email: bange...@colostate.edu
> www: http://www.math.colostate.edu/~bangerth/
>
>
> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options
Najwa:
I know that merge triangulation in deal.ii will not work properly if there are
hanging nodes ( unmatching of the meshes at the interface).
My question is, what if I have to have this hanging node? Is there a way I can
work it out, or are there any other suggestions I should try
--
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www: http://www.math.colostate.edu/~bangerth/
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that mapping.
Best
W.
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www: http://www.math.colostate.edu/~bangerth/
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For mailing
the triangulation?
for (unsigned int cell = 0;
cell < system_matrix.get_matrix_free()->n_cell_batches();
++cell)
{
phi.reinit(cell);
for (const unsigned int q : phi.quadrature_point_indices())
phi.submit_value(make_vectorized_array
<https://www.dealii.org/current/doxyge
github.com/Homebrew/brew
> >> >
> >> > HEAD: f84082963da8af8c9ccd6dffbe932eba457e2b78
> >> >
> >> > Last commit: 2 days ago
> >> >
> >> > Branch: stable
> >> >
> >> > Core tap JSON: 01 Jan 00:49 UTC
> >
gt;> > Branch: stable
>> >
>> > Core tap JSON: 01 Jan 00:49 UTC
>> >
>> > Core cask tap JSON: 01 Jan 00:49 UTC
>> >
>> > HOMEBREW_PREFIX: /opt/homebrew
>> >
>> > HOMEBREW_CASK_OPTS: []
>> >
>&g
REW_MAKE_JOBS: 12
> >
> > Homebrew Ruby: 3.3.6 =>
> > /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.6/bin/ruby
> >
> > CPU: dodeca-core 64-bit arm_blizzard_avalanche
> >
> > Clang: 16.0.0 build 1600
> >
> > Git: 2.39.5 => /Applic
ode.app/Contents/Developer/usr/bin/git
>
> Curl: 8.7.1 => /usr/bin/curl
>
> macOS: 14.7.2-arm64
>
> CLT: 16.2.0.0.1.1733547573
>
> Xcode: 16.2
>
> Rosetta 2: false
>
> (base) mmohebuj@CASTFX0F4V2Math ~ % cmake --version
>
> cmake version 3.31.3
>
.31.3
CMake suite maintained and supported by Kitware (kitware.com/cmake).
*./candi.sh -j 8 --packages="hdf5 p4est trilinos dealii"*
-- Include
/Users/mmohebuj/dealii-candi/tmp/unpack/deal.II-v9.6.1/cmake/setup_compiler_flags.cmake
-- Performing Test DEAL_II_HAVE_USABLE_USER_FL
ealii"
>
> *Building dealii v9.6.1*
>
> -- This is CMake 3.31.3
>
> --
>
> .
>
> -- Include
> /Users/mmohebuj/dealii-candi/tmp/unpack/deal.II-v9.6.1/cmake/checks/check_01_cxx_features.cmake
>
> -- C++17 suppor
Hi all,
We (the developers) would like to get your feedback regarding your usage
and ideas about deal.II. This is important for us for current and future
funding and to make sure we steer the development of the library in a
direction that is most useful for the community.
Please go to the
ake 3.31.3
--
.
-- Include
/Users/mmohebuj/dealii-candi/tmp/unpack/deal.II-v9.6.1/cmake/checks/check_01_cxx_features.cmake
-- C++17 support is disabled.
CMake Error at cmake/checks/check_01_cxx_features.cmake:368 (message):
The current version of deal.II requires a compiler wi
better.
>>>
>>> best,
>>> Abbas
>>>
>>> On Wednesday, December 25, 2024 at 6:57:02 PM UTC+1 najwaa...@gmail.com
>>> wrote:
>>>
>>>> Dear all,
>>>>
>>>> I have a quick question here.
>>>
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