Zoe:
These sorts of issues often take a bit of time to debug. But here are a few questions:


I would greatly appreciate any insights or suggestions you might have regarding this issue. Here are a few things I suspect could be contributing to the problem:

 1. *Time Integration Scheme*: I may not be implementing the second-order
    time-stepping correctly, especially in handling the nonlinear terms.

In that case, what happens if you choose a solution that is time-independent? Do you obtain the expected convergence rate?


 2. *Finite Element Discretization*: I’m currently using standard linear
    elements, but I wonder if higher-order elements are needed for this scheme
    to achieve second-order accuracy.

What happens if you choose a higher-order element?


 3. *Energy Stability*: There could be issues with maintaining energy
    stability in the scheme, which might be affecting the overall accuracy.

Have you tried computing the energy in the (numerical) solution to test whether that is an issue?

Best
 Wolfgang

--
------------------------------------------------------------------------
Wolfgang Bangerth          email:                 bange...@colostate.edu
                           www: http://www.math.colostate.edu/~bangerth/


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