Re: [ccp4bb] [EXTERNAL] [ccp4bb] access to the electron density maps of a PDB entry

We also recently found out that mtz files are no longer available for download from RCSB and structure factor cif files may or may not contain map coefficients, depending on the entry. For this particular entry, 8hbk, the map coefficients are actually contained in the 8hbk-sf.cif file. You may

Re: [ccp4bb] [EXTERNAL] Re: [ccp4bb] add ligand with AceDRG

Dear all, Perhaps the issue is that the refinement program should be able to handle the priority of ligand dictionary, i.e. your custom ligand ID and dictionary overrides any existing in the default collection. I have not had any trouble with LIG or SX1, both existing in PDB ligands. I also n

[ccp4bb] Postdoc in Structural Biology of Membrane Transporters at New York University School of Medicine

edu>. -- Da-Neng Wang, Ph.D. Professor Department of Cell Biology New York University School of Medicine 8th Floor, Lab 822 ACLS East Tower 450 E 29 Street New York, NY 10016 USA Phone:(212) 263-8634 Fax: (212) 263-2150 E-mail:da-neng.w...@med.nyu.edu<mailto:

[ccp4bb] Structural Biology position at Eli Lilly in Indianapolis, IN, U.S.A.

Sorry about the mangled link. Here is the correct link: https://lilly.wd5.myworkdayjobs.com/LLY/job/US-Indianapolis-IN/Advisor---Structural-Biologist_R-30998 From: CCP4 bulletin board On Behalf Of Yong Wang Sent: Friday, April 29, 2022 1:01 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [EXTERNAL

[ccp4bb] Structural Biology position at Eli Lilly in Indianapolis, IN, U.S.A.

employment with Eli Lilly and Company and its subsidiaries in the United States and Puerto Rico, you must be fully COVID-19 vaccinated and provide proof of vaccination satisfactory to the company (subject to applicable law). Regards, Yong Wang, Ph.D. Executive Director Global Structural Biolog

[ccp4bb] Structural Biology position at Eli Lilly in San Diego, CA

subsidiaries in the United States and Puerto Rico, you must be fully COVID-19 vaccinated and provide proof of vaccination satisfactory to the company (subject to applicable law). Regards, Yong Wang, Ph.D. Executive Director Global Structural Biology Lilly Research Laboratories Lilly Corporate C

Re: [ccp4bb] [EXTERNAL] Re: [ccp4bb] question using a model from a multiple model PDB file using Phaser

Hi Randy, Thanks for the trouble shoot and update to the documentation. Now the keyword "MODEL SERIAL" is doing what it intends to do. My problem is fixed. Regards, Yong -Original Message- From: Randy John Read Sent: Friday, December 10, 2021 6:22 AM To: Yong Wang

Re: [ccp4bb] [EXTERNAL] Re: [ccp4bb] question using a model from a multiple model PDB file using Phaser

ght be to use ensembler to generate the ensemble! Best wishes, Randy Read > On 9 Dec 2021, at 21:00, Yong Wang > <3c4fc05cc53b-dmarc-requ...@jiscmail.ac.uk> wrote: > > Hi, > > > > The first model number in the pdb file is 1. In the script it i

Re: [ccp4bb] question using a model from a multiple model PDB file using Phaser

Hi, The first model number in the pdb file is 1. In the script it is "MODEL 1". I will try "MODEL 0" in the script to see how it goes. Thanks, Yong From: Boaz Shaanan Sent: Wednesday, December 8, 2021 7:37 AM To: Yong Wang Cc: CCP4BB@JISCMAIL.AC.UK Subject: [E

[ccp4bb] question using a model from a multiple model PDB file using Phaser

AX ERROR: Use SERIAL -- $$ I am assuming that the error is from using the "MODEL 1" and not due to something else. Does anyone have any suggestion on this problem? Thanks, Yong Yong Wang, Ph.D. Senior Research Advisor Global Structural Biology Lilly Research Labor

[ccp4bb] Postdoc in Structural Biology of Membrane Transporters, New York University School of Medicine, New York City

d.nyu.edu>. -- ---- Da-Neng Wang, Ph.D. Professor Structural Biology Program Skirball Institute of Biomolecular Medicine New York University School of Medicine 540 First Avenue New York, NY 10016 USA Phone: (212) 263-8634 Fax:

[ccp4bb] Beamtime @ SLS

Dear SLS users, We hope that this email finds you well and healthy in these uncertain times. We would like to update you on the SLS operational status: * We offer general beamtime to keep the research going for the MX community in both academia and industry. * We have canceled the East

Re: [ccp4bb] Wincoot stereo display on Windows 10

Hi Eric, Yes. Hardware stereo on Windows 10 is sorely needed considering Windows 10 has been out for nearly 5 years and Windows 7 has been dropped from support. Regards, Yong From: ENNIFAR Eric (ARN) Sent: Tuesday, March 24, 2020 4:46 AM To: EchelonIV . ; Yong Wang Cc: CCP4BB Subject

Re: [ccp4bb] [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10

. Thanks, Yong From: EchelonIV . Sent: Monday, March 23, 2020 2:53 PM To: Yong Wang Cc: CCP4BB@jiscmail.ac.uk Subject: [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10 EXTERNAL EMAIL: Use caution before replying, clicking links, and opening attachments. I tried all settings through on

Re: [ccp4bb] [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10

Hi Arne, Are you using Wincoot “hardware stereo” option on your laptop? Are you viewing the stereo directly on your laptop display or through a 3D external monitor? Thanks, Yong From: EchelonIV . Sent: Monday, March 23, 2020 2:12 PM To: Yong Wang Cc: CCP4BB@jiscmail.ac.uk Subject

Re: [ccp4bb] [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10

, 2020 11:46 AM To: Yong Wang Cc: CCP4BB@jiscmail.ac.uk Subject: [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10 EXTERNAL EMAIL: Use caution before replying, clicking links, and opening attachments. Hello, stereo display works completely fine for me on Windows 10 (WinCoot version

Re: [ccp4bb] Wincoot stereo display on Windows 10

: Monday, March 23, 2020 11:50 AM To: Yong Wang Cc: CCP4BB@JISCMAIL.AC.UK Subject: [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10 EXTERNAL EMAIL: Use caution before replying, clicking links, and opening attachments. Dear Yong, I tried hard but I couldn't find any way to ma

Re: [ccp4bb] [EXTERNAL] Re: [ccp4bb] Wincoot stereo display on Windows 10

Arne, Thanks! Now the challenge is to find version 0.8.6.1. It seems newer version does not work. Please let me know if you know a way to get hold of version 0.8.6.1. Yong From: EchelonIV . Sent: Monday, March 23, 2020 11:46 AM To: Yong Wang Cc: CCP4BB@jiscmail.ac.uk Subject: [EXTERNAL

[ccp4bb] Wincoot stereo display on Windows 10

Hello, Wincoot stereo display works on Windows 7 but not on Windows 10 (program crashes as soon as stereo is enabled). It has been a while since Windows 10 became the main Windows platform. Has anyone found a way to get Wincoot stereo display to work on Windows 10? Thanks, Yong Research Ad

Re: [ccp4bb] Wincoot middle-mouse button does not work

Dear Herman, My middle-mouse button works with Wincoot. I happened to be using version 0.8.7 (for a different reason). Newer versions probably should also work. I am using a three button mouse. Yong From: CCP4 bulletin board On Behalf Of Schreuder, Herman /DE Sent: Monday, March 23, 2020

[ccp4bb] MX beamline data scientist position at SLS

Dear all, The planned SLS 2.0 upgrade provides a unique opportunity to further develop three MX beamlines at SLS. To fully utilize the brightness enhancement of SLS 2.0, we will explore data-driven approaches in MX experiments. Therefore, we are searching for a beamline data scientist to join t

[ccp4bb] SFX scientist position at PSI

An opportunity to develop SFX instruments and applications at the new Cristallina end station at the SwissFEL https://www.psi.ch/en/pa/job-opportunities/31011-beamline-scientist To unsubscribe from the CCP4BB list, c

[ccp4bb] Fwd: SFX beamline scientist position at the SwissFEL

Somehow the link changed, here is the updated one. https://www.psi.ch/en/pa/job-opportunities/27905-beamline-scientist Best meitian Begin forwarded message: From: Meitian Wang mailto:meitian.w...@psi.ch>> Subject: SFX beamline scientist position at the SwissFEL Date: 18 April 2019 at 10

[ccp4bb] SFX beamline scientist position at the SwissFEL

and operate a dedicated serial femtosecond crystallography (SFX) station at the SwissFEL. Detailed information and the online application portal can be found at https://www.psi.ch/pa/stellenangebote/2000. Best regards, meitian __ Meitian Wang Head of

Re: [ccp4bb] [EXTERNAL] [ccp4bb] 3D Glasses (stereo)

We have no problem with 3D vision under Windows 7. You don't even need high-end Quadro graphics cards. Make sure your graphics driver is up-to-date. The challenge now is to find the 3D ready monitors, especially large sized (>24"). Yong -Original Message- From: CCP4 bulletin board

[ccp4bb] Two postdoc positions at SLS

Dear all, We have two openings for motivated postdocs interested in methods development in MX. Membrane protein serial crystallography Your tasks Serial crystallography (SX) has emerged as an effective method for micron-sized crystals, such as the ones from membrane proteins. To ease their hand

[ccp4bb] Beamtime @ SLS

=== SYNCHROTRON BEAM TIME FOR MACROMOLECULAR CRYSTALLOGRAPHY AT SLS === Proposal application deadline: Monday, October 15, 2018 Periods: January 1, 2019 - June 3

[ccp4bb] Postdoc position at University of California, Irvine (Irvine, CA)

Hi Could you post the following to CCP4BB? Thanks. Best, Tianyu ___ Postdoc position at University of California, Irvine (Irvine, CA) One postdoctoral position is available in Dr. Rongsheng Jin’s laboratory at the Department of Physiology and Bio

[ccp4bb] Beamtime @ SLS

i/pxii>) Best regards, The MX group at SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ <http://www.psi.ch/sls/> Phone: +41 56 310 4175

[ccp4bb] Beamtime @ SLS

SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ <http://www.psi.ch/sls/> Phone: +41 56 310 4175

[ccp4bb] Postdoc Position Available in Structural and Functional Study of Macromolecular Complexes In Transcription And Repair at UCSD

Please help to post following postdoc recruitment ad. Many thanks. A postdoc position, supported by NIH funding, is available in the lab of Dong Wang at University of California, San Diego. Our research focuses on the interplay between two fundamental processes: transcription and

[ccp4bb] Postdoc position at Houston TMC area

Dear All, A CPRIT funded postdoctoral position on single particle cryo-EM is available at Houston Texas Medical Center. The project will be led by the Dr. Mien-Chie Hung group at the University of Texas MD Anderson and will involve collaborations with Dr. Zhao Wang group (Baylor College of

[ccp4bb] Beamtime @ SLS

psi.ch/sls/pxiii/pxiii <http://www.psi.ch/sls/pxiii/pxiii>) X10SA Beamline (http://www.psi.ch/sls/pxii/pxii <http://www.psi.ch/sls/pxii/pxii>) Best regards, The MX group at SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Vi

Re: [ccp4bb] [EXTERNAL] [ccp4bb] Pymol alignment command grammar help

The “name” means atom names, e.g. n for nitrogen (backbone), yes, you would use “name” (or n. in short) in your command. From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Alex Lee Sent: Friday, March 17, 2017 2:34 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [EXTERNAL] [ccp4bb] Pymol

Re: [ccp4bb] [EXTERNAL] Re: [ccp4bb] B-factors/Occupancies Versus "Local Resolution"

Ian, Won’t the spatial resolution of the electron density map be determined more or less by the “resolution” (d-spacing)? While the normal electron density includes model contribution, what about the resolution of the Patterson map? For the case of powder diffraction, after the lines are reso

Re: [ccp4bb] Coot and Pymol 3D in Quadro M4000 Graphics Card under Windows 10

Xiao, I had a direct connection from display port to display port that had worked for several years (Windows 7). Since last year I have been losing the stereo. Often the control panel won’t show the 120 Hz like what you saw. Sometimes I was able to forcefully add a 120 Hz resolution (using t

Re: [ccp4bb] New BUILT of XDS for academic users

Dear Kay, I updated this version and noticed some error message that I haven't experience before. When I cp latest geometry description over previous one and rerun integrate & correct, there's a very large chance to get "!!! ERROR !!! CANNOT OPEN OR WRITE SCRATCH FILE IN "STRONGHKL1"". xds_par the

Re: [ccp4bb] XDS questions

; > > in XDS (CORRECT) and be done with it. If you want to use Aimless for > > > merging, you can turn off scaling with the ONLYMERGE keyword or use > SCALES > > > CONSTANT. > > > > > > All best. > > > > > > > > > And

Re: [ccp4bb] XDS questions

gt; > Dear Wei, > > if you process your data with XDS, the best is probably to do the scaling > in XDS (CORRECT) and be done with it. If you want to use Aimless for > merging, you can turn off scaling with the ONLYMERGE keyword or use SCALES > CONSTANT. > > All best. >

[ccp4bb] XDS questions

Hi, Is there a way to let xds_par use less than all processors/threads on the machine? Sometimes I would like to process something else while XDS is running. Another question is related to the scaling procedure. My understanding is that the XDS already does the scaling during correction. So if I

[ccp4bb] Beamtime @ SLS

s/pxi/pxi>) X06DA Beamline (http://www.psi.ch/sls/pxiii/pxiii <http://www.psi.ch/sls/pxiii/pxiii>) X10SA Beamline (http://www.psi.ch/sls/pxii/pxii <http://www.psi.ch/sls/pxii/pxii>) Best regards, The MX group at SLS __ Meitian Wang Swiss Light

Re: [ccp4bb] FW: New ligand 3-letter code (help-7071)

Sharing a ligand name should only be limited to having the same compound, i.e. same 2D structure or connectivity. Each deposition should have its own 3D coordinates. If a different publication gets your ligand 3D coordinates ("2Y59 actually embodies the atomic coordinates from the 2Y2I"), that

[ccp4bb] FW: [3dem] Citing Structures

Letter send on the behalf of Dr. Les Loew: Dear Crystallography Community, The Biophysical Journal (BJ) and the Biophysical Society leadership recently published a joint Editorial entitled “Reproducibility of Research in Biophysics

Re: [ccp4bb] Easy way to generate symmetry-related protein chains? (summary)

Yes, "Save Symmetry Coordinates" in COOT is a very easy way. To avoid text editing, you can first reload the pdb and use the "Copy Fragment ..." under Extensions/Modeling to get the desired chains. Then use the "Merge Molecules" under Calculate to assemble. Yong -Original Message- Fr

[ccp4bb] In Situ Serial Crystallography Workshop at SLS

workshop is limited to 20 students. The application deadline is August 15. Organizers Meitian Wang (PSI), Vincent Olieric (PSI), Martin Caffrey (Trinity College Dublin), Kay Diederichs (Uni Konstanz) http://indico.psi.ch/event/issx __ Meitian Wang Swiss Light Source

Re: [ccp4bb] Two kinds of solvent-accessible-surface ?

Pymol should draw the molecular surface (or Connolly surface) by default. If you want the solvent accessible surface, turn on the option "solvent accessible" under Setting/Surface. Yong -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Edward A.

[ccp4bb] Immediately available: Postdoctoral Position in Protein X-ray and Neutron Crystallography in the Quiocho Group

Postdoctoral Position: Protein X-ray and Neutron Crystallography One Postdoc position to undertake protein X-ray and neutron crystallography, along with biophysical/biochemical functional studies, is available in the structural biology laboratory of Prof. Florante A. Quiocho at Baylor College of

[ccp4bb] off topic: DLS instrument

Sorry for an off-topic question. We are seeking a new DLS(Dynamic Light Scattering) instrument which is best for our needs. Any suggestion to a traditional structural biology lab? The make, model #? Any suggestion will be very appreciated. Thank you! Best, Adam

[ccp4bb] Beamtime @ SLS

SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ Phone: +41 56 310 4175

[ccp4bb] Cryo-EM Subgroup of the Biophysical Society

ryoEM If you are a member of the Society, please sign the petition! If you are not a member, please join so that you may then sign the petition! Regards, Bridget Carragher Yifan Cheng Edward Egelman (President of the Biophysical Society) Irina Serysheva David Stokes Da-Neng Wang

[ccp4bb] 2nd Announcement and etc - the 5th Winter School on Soft X-rays in MX

Posted on behalf of the Organizing Committee: John Rose and Bi-Cheng Wang (University of Georgia, Athens, Georgia, U.S.A.) Manfred Weiss (Helmholtz-Zentrum Berlin für Materialien und Energie, Berlin, Germany) Christoph Mueller-Dieckmann (ESRF, Grenoble, France)2nd Announcement and New Additions to

Re: [ccp4bb] chloride or water

The discrepancy between using the original mtz and an updated mtz is likely the result of the Fobs being placed on the Fcalc scale from Refmac output, not direct reading of Fcalc. -YW -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Keller, Jacob

Re: [ccp4bb] export the x, y value from AKTA UNICORN

You guys are fantastic! Thank you, Roberto and Monica!! Bing From: Orru, Roberto [roberto.o...@emory.edu] Sent: Monday, January 12, 2015 10:44 PM To: Wang, Bing; CCP4BB@JISCMAIL.AC.UK Subject: RE: export the x, y value from AKTA UNICORN Hello Bing, It is

[ccp4bb] export the x, y value from AKTA UNICORN

Hi all, Sorry for this off topic! I need you guys to help me to export the x/y value from AKTA UNICORN since I want to redraw it in EXCEL. Is it possible? How to do? Also I don't need and like the software which can extract the data from the images or pdf files, because it is not precise. Than

[ccp4bb] Announcement - 5th Winter School on Soft X-rays in Macromolecular Crystallography

Sent on behalf of the Organizing Committee: John Rose, Manfred Weiss, Christoph Mueller-Dieckmann and B.C. WangThe 5th Winter School on Soft X-Rays in Macromolecular Crystallography Location: Georgia Center, The University of Georgia, Athens, Georgia, USA 30602 Dates: March 1 - 4, 2015The 5th Winte

[ccp4bb] Beamtime @ SLS

up at SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ Phone: +41 56 310 4175

Re: [ccp4bb] how to measure the angle between two aromatic ring plane in PYMOL?

end! Bing From: Oliver Smart [osm...@globalphasing.com] Sent: Friday, September 26, 2014 8:36 AM To: Wang, Bing Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] how to measure the angle between two aromatic ring plane in PYMOL? On Thu, 25 Sep 2014, Wang, Bing wrote: > Hi everyone, > > I wa

[ccp4bb] how to measure the angle between two aromatic ring plane in PYMOL?

gle between the best fit planes? I tried svdplos.py and makeCGOplates.py which are downloaded on line. unfortunately both of these can't be loaded into pymol properly. Solutions? Thanks! Bing Wang

Re: [ccp4bb] ligand mismathces in pdb deposit

Thank you very one here! Got fixed from Katherine's solution! You guys are really helpful! Bing From: Katherine Sippel [katherine.sip...@gmail.com] Sent: Monday, September 15, 2014 3:17 PM To: Wang, Bing Cc: ccp4bb Subject: Re: [ccp4bb] ligand mismathces i

Re: [ccp4bb] ligand mismathces in pdb deposit

Forgot the picture! Here is it! From: Paul Emsley [pems...@mrc-lmb.cam.ac.uk] Sent: Sunday, September 14, 2014 6:16 PM To: Wang, Bing Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] ligand mismathces in pdb deposit On 12/09/14 23:28, Wang, Bing wrote

Re: [ccp4bb] ligand mismathces in pdb deposit

[pems...@mrc-lmb.cam.ac.uk] Sent: Sunday, September 14, 2014 6:16 PM To: Wang, Bing Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] ligand mismathces in pdb deposit On 12/09/14 23:28, Wang, Bing wrote: > Hi guys, Hello. > > A quick question about pdb deposition! My protein has a common li

[ccp4bb] ligand mismathces in pdb deposit

since my model don't have hydrogen atoms. Actually i replace the heme with exact one from CCD and run refmac which give me a new pdb file. Unfortunately, CCD still didn’t recognize the heme. Solutions? Thank you!! Bing Wang

Re: [ccp4bb] Add water in the symmetry center?

Thank you for all reply! You guys are really helpful! I appreciate it! Bing From: Oliver Clarke [oc2...@columbia.edu] Sent: Monday, August 11, 2014 4:21 PM To: CCP4BB@JISCMAIL.AC.UK; Wang, Bing Subject: Re: Add water in the symmetry center? Dear Bing, My

[ccp4bb] Postdoctoral Positions Immediately Available at Baylor College of Medicine

Dear Colleagues, I would like to draw your attention to the following Postdoctoral Position openings immediately available in my group at Baylor College of Medicine. Please encourage prospective candidates to apply for these positions. Thank you so much, Qinghua Qinghua Wang, Ph.D. Assistant

[ccp4bb] The modified DNA could not be linked to the downstream DNA in the COOT?

Hi, There is a problem about modified DNA refinement. I generated one CIF file of a modified DNA base using eLBOW software of PHENIX. However I found the modified DNA could not be linked to the downstream DNA when I refined it in the COOT. Then I generated another CIF file using sketcher of CC

[ccp4bb] Beamline scientist position at SLS and SwissFEL

are able to support you with our modern employment conditions and the on-site infrastructure. For further information please contact Dr Meitian Wang, phone +41 56 310 41 75 or Dr Rafael Abela, phone +41 56 310 32 71. Please submit your application online (including list of publications and

[ccp4bb] Beamtime @ SLS

30 x 30 micrometer) - PILATUS 6M pixel detector Best regards, The MX group at SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ Phone: +41 56 310 4175

Re: [ccp4bb] baverage: no tables were found in this file

fferent PDB file. In case you are using baverage from the >>> command line, can you make sure you are actually using the program from >>> ccp4 by typing 'which baverage' at the command prompt? >>> >>> Regards. >>> Tim >>> >>> On 06/

[ccp4bb] baverage: no tables were found in this file

Hi CCP4, Recently when I input my pdb file and run the baverage in the ccp4 suit to check the temperature factor, it always tell me "No tables were fund in this file." Could you tell me how to fix this problem? Or is there another software instead of baverage I could use to check the temperatu

Re: [ccp4bb] report mosaicity

tm, > for example). > > > On 16 May 2014, at 00:26, hongshi WANG wrote: > > Hello everyone, > > I am gonna report the mosaicity of my data set as required by the journal. > I processed the data using HKL2000. So I checked the denzo log file. I > found many different mos

[ccp4bb] report mosaicity

Hello everyone, I am gonna report the mosaicity of my data set as required by the journal. I processed the data using HKL2000. So I checked the denzo log file. I found many different mosaicity values. The first one is default input (0.3), the rest are corresponding to specific images. I think the

[ccp4bb] Can not see density map when I turn off normalization in PYMOL

Hello there, I am making a fo-fc map for one ligand using pymol. I strictly followed the pymol wiki protocol (Display CCP4 Maps). Finally, I can get the ligand map using command: isomesh fo-fc_ligand, omitmap, 3, ligand, carve=2. However, the problem is the map I got from pymol is smaller tha

[ccp4bb] Postdoctoral Associate Positions in Structural Biology or Biochemistry

st populous city in the United States, and an international city that is a leader in the arts, education, and health care. Interested individuals should submit a CV, a cover letter, and names of three referees to: Qinghua Wang, Ph.D., Assistant Professor Department of Biochemistry and Mole

[ccp4bb] Beamtime @ SLS

10 microns and 0.6x0.1 mrad - Micro-beam with apertures (10 x 10, 30 x 30 micrometer) - PILATUS 6M pixel detector Best regards, The MX group at SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ Phone: +41 56 310 4175

[ccp4bb] A very interesting article

Biophysical Highlights from 54 Years of Macromolecular Crystallography Jane Richardson and David Richardson http://www.sciencedirect.com/science/article/pii/S0006349514000332 — Da-Neng Wang, Ph.D. Professor

Re: [ccp4bb] making high res image in pymol

Yong -- Yong Wang, Ph.D. Research Advisor, Discovery Chemistry Research Eli Lilly & Company Phone: 317-655-9145 Lilly Corporate Center DC 0403 Fax: 317-651-6333 Indianapolis,

Re: [ccp4bb] Two P1 xtals with same xtal contacts give 2 different asymmetric units

as having empty density. The equivalent assembly of asu can happen to any crystal form but if you try to keep the equivalent molecules together, it may appear more easily in P1 due to the arbitrary origin shift in P1. [cid:image001.png@01CF1824.9A115470] Cheers, Yong

[ccp4bb] Beamline scientist position at SLS

information please contact Dr Meitian Wang, phone +41 56 310 41 75. Please submit your application online (including list of publications and addresses of referees) for the position as a Beamline Scientist (index no. 6112-02). Paul Scherrer Institut, Human Resources, Elke Baumann, 5232 Villigen PSI

[ccp4bb] Beamtime @ SLS

1 mrad - Micro-beam with apertures (10 x 10, 30 x 30 micrometer) - PILATUS 6M pixel detector Best regards, The MX group at SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ Phone: +41 56 310 4175

[ccp4bb] Postdoc Position in Structural Biology of Membrane Proteins

techniques (http://skirball.med.nyu.edu/faculty/da-neng-wang/wang-lab). The Skirball Institute, located in the middle of Manhattan, provides a great environment for research. Our laboratory is equipped with state-of-the-art facilities. Strong background in cell culture, eukaryotic protein

[ccp4bb] Xtal formed during purification

Hi all, After I purified my target protein by ion exchange, I left the fractions with high protein concentrations overnight @4C. Now I saw a lot of small needle crystals inside the EP tubes this morning. I wonder whether there is any technique or method to get bigger crystals from this? ZZ

[ccp4bb] Beamtime @ SLS

d 0.6x0.1 mrad - Micro-beam with apertures (10 x 10, 30 x 30 micrometer) - PILATUS 6M pixel detector Best regards, The MX group at SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ Phone: +41 56 310 4175

[ccp4bb] Beamline scientist position at SLS

information please contact Dr Meitian Wang, phone +41 56 310 41 75. Please submit your application online (including list of publications and addresses of referees) for the position as a Beamline Scientist (index no. 6112-02). Paul Scherrer Institut, Human Resources, Elke Baumann, 5232 Villigen PSI

Re: [ccp4bb] how to make the crystal thicker

. --- Yong Wang, Ph.D. Research Advisor, Discovery Chemistry Research Eli Lilly & Company Phone: 317-655-

[ccp4bb] Problem with RCrane in coot-0.7

, I'm using the 64bit Scientific Linux 6.0. Any suggestions? Thanks a lot! Best, Jiawei Wang<>

[ccp4bb] Postdoc position at SLS

research career in an exciting and highly multidisciplinary environment. For further information please contact Dr Meitian Wang, phone +41 56 310 41 75 or Dr Clemens Schulze-Briese, phone +41 56 500 21 20. Please submit your application online (including list of publications and addresses of

[ccp4bb] Postdoc Position in Structural Biology of Membrane Proteins

research interest and names of three references to Da-Neng Wang at w...@saturn.med.nyu.edu. Da-Neng Wang, Ph.D. Professor Structural Biology Program Skirball Institute of Biomolecular Medicine New York University School

[ccp4bb] protein dodecamer

Dear all, I am looking for proteins that form a dodecameric ring structure (Not two rings of hexamer Nor tetrahedral distribution of subunit trimers). I found some phage portal proteins after a quick search in PDB, but I need more. Does anyone know more protein dodecamers that has C12 symmetry?

[ccp4bb] Beamtime @ SLS

_ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ Phone: +41 56 310 4175

[ccp4bb] Scientist position available at SLS

establish your research career in an exciting and highly multidisciplinary environment. For further information please contact Dr Meitian Wang, phone +41 56 310 41 75, Dr Vincent Olieric, phone +41 56 310 52 33 or Prof. Dr Michel Steinmetz, phone +41 56 310 47 54. Please submit your applicat

Re: [ccp4bb] Unusually low B factors with phenix

Pavel, 1.8.1-1168 also has this problem. I found this problem existed with some dataset, but not all dataset. 1.8.1 give better map, so I built model with 1.8.1 map and go back to 1.7.3 before I deposit the structure to PDB. When I compared the B factor from 1.8.x and 1.7.3, I found B(1.7.3)=B(

[ccp4bb] Beamtime @ SLS

up at SLS __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http://www.psi.ch/sls/ Phone: +41 56 310 4175 Fax: +41 56 310 5292

[ccp4bb] Postdoc position at SLS MX group

. If you are a good team player with fine communication skills and sense of responsibility, this position will offer a great opportunity for you to develop your research career in an exciting and highly multidisciplinary environment. For further information please contact Dr Meitian Wang, phone

[ccp4bb] Position in Structural Biology of Nucleic Acids/Protein Complex

at least two first author papers in this area. The candidate shall expected to have extensive experiences in determining crystal structures and have experience in molecular biology and protein biochemistry. Interested candidates can email a CV, three contacts for reference to Dr. Dong Wang at

[ccp4bb] Beamline scientist position at SLS

multidisciplinary environment. For further information please contact Dr Meitian Wang, phone +41 56 310 41 75. Please submit your application online (including list of publications and addresses of referees) for the position as a Beamline Scientist (index no. 6112-01). Paul Scherrer Institut, Human

[ccp4bb] Nagoya Symposium: Frontiers in Structural Physiology

Masahide Kikkawa Brian Kobilka Werner Kühlbrandt Roderick MacKinnon Kaoru Mitsuoka Atsuo Miyazawa Haruki Nakamura Keiichi Namba Osamu Nureki Douglas Rees Gebhard Schertler Ichio Shimada Christopher Tate Tomitake Tsukihara Nigel Unwin Gunnar von Heijne Thomas Walz Da-Neng Wang Organizers: Kaoru

[ccp4bb] Workshop on Advanced Data Collection with Multi-axis Goniometer and Single-photon Counting Detector

-Briese, Dectris, Ltd. Tadeusz Skarzynski, Agilent Technologies Andrew Thompson, SOLEIL Clemens Vonrhein, Global Phasing Ltd. Sandro Waltersperger, SLS Manfred Weiss, BESSY __ Meitian Wang Swiss Light Source at Paul Scherrer Institut CH-5232 Villigen PSI - http

[ccp4bb] Beamtime @ SLS

/sls/pxii/spectrolab) - PILATUS 6M pixel detector Note: beamtime for single crystal spectroscopy is very limited in this call period due to a scheduled diffractometer upgrade. Best regards, The MX group at SLS __ Meitian Wang Swiss Light Source at Paul Scherrer In

[ccp4bb] Postdoc position at the Noble Foundation, USA

. Applicants should have a Ph.D. with experience in crystallography and protein expression and purification. Starting salaries begin at $41,200 with excellent benefits. Informal inquiries can be made to Dr. Xiaoqiang Wang (Email: xw...@noble.org). Application Instructions: Applicants are requested to

[ccp4bb] Postdoc postion at SLS

multidisciplinary environement. For further information please contact Dr Meitian Wang, phone +41 56 310 41 75, or Dr. Clemens Schulze-Briese, clemens.schulzebri...@dectris.com Please submit your application online (including list of publications and addresses of referees) for the position as

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