can you paste the full session text into the email (not as a screen
shot)?
On Fri, 1 Dec 2017, Michelle VanTieghem wrote:
Hi, I am unsure whether this worked: see attached screenshot.
Thanks!
M
On Fri, Dec 1, 2017 at 4:26 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
yes, it should. You should just be able to do a "put"
On Fri, 1 Dec 2017, Michelle VanTieghem wrote:
Hi,
I am confused by the instructions for the ftp. Once I am logged
into the ftp and have navigated to
the transfer/incoming
directory, how am I supposed to find / access the file that I would
ike to send through? Does
terminal still recognize my
working directory before I logged into the ftp?
Thanks!
Michelle
On Sat, Nov 18, 2017 at 2:54 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
Hi Michelle
probably best to tar and gzip the entire subject directory
and ftp it to us:
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
cheers
Bruce
On Sat, 18 Nov 2017, Michelle VanTieghem wrote:
Hi,
Yes I can send you the data - should I just attach the
mprage file in the email, or is
there
another
way to share the data with freesurfer? Also, should I
send one scan or multiple
scans?
Thanks,
Michelle
On Sat, Nov 18, 2017 at 10:37 AM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
Hi Michelle
are you doing anything out of the ordinary? Do
you want to send us a dataset and
we will
take a look? I don't think 6.0 is very different
from 5.3 in regard to skull
stripping,
although it is probably a bit better
Bruce
On Fri, 17 Nov 2017, Michelle VanTieghem wrote:
Hello,
I have posted several times about problems
with skull-stripping with our
dataset. We have tried gcut
and multiple other options in other
packages (AFNI, FSL, ANTS) to remove
skull from structural
images in our dataset with little success.
Recently, a colleague suggested this may be
due to versions: that 6.0
deals
with skull stripping
much better than 5.3.
I wanted to ask if indeed this could be
the case before I go install 6.0
and re-run everything in
my study.
Thank you,
Michelle
--
Michelle VanTieghem
PhD student in Psychology
Developmental Affective Neuroscience Lab
Columbia University
mrv2...@columbia.edu
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--
Michelle VanTieghem
PhD student in Psychology
Developmental Affective Neuroscience Lab
Columbia University
mrv2...@columbia.edu
--
Michelle VanTieghem
PhD student in Psychology
Developmental Affective Neuroscience Lab
Columbia University
mrv2...@columbia.edu
--
Michelle VanTieghem
PhD student in Psychology
Developmental Affective Neuroscience Lab
Columbia University
mrv2...@columbia.edu
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