Hi Michelle
probably best to tar and gzip the entire subject directory and ftp it to
us:
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
cheers
Bruce
On
Sat, 18 Nov 2017, Michelle VanTieghem wrote:
Hi,
Yes I can send you the data - should I just attach the mprage file in the
email, or is there another
way to share the data with freesurfer? Also, should I send one scan or multiple
scans?
Thanks,
Michelle
On Sat, Nov 18, 2017 at 10:37 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Michelle
are you doing anything out of the ordinary? Do you want to send us a
dataset and we will
take a look? I don't think 6.0 is very different from 5.3 in regard to
skull stripping,
although it is probably a bit better
Bruce
On Fri, 17 Nov 2017, Michelle VanTieghem wrote:
Hello,
I have posted several times about problems with skull-stripping
with our
dataset. We have tried gcut
and multiple other options in other packages (AFNI, FSL, ANTS) to
remove
skull from structural
images in our dataset with little success.
Recently, a colleague suggested this may be due to versions: that
6.0 deals
with skull stripping
much better than 5.3.
I wanted to ask if indeed this could be the case before I go
install 6.0
and re-run everything in
my study.
Thank you,
Michelle
--
Michelle VanTieghem
PhD student in Psychology
Developmental Affective Neuroscience Lab
Columbia University
mrv2...@columbia.edu
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--
Michelle VanTieghem
PhD student in Psychology
Developmental Affective Neuroscience Lab
Columbia University
mrv2...@columbia.edu
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